Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1798 ATGAAACGCCGTTTTCTCGAAACAGAGATGAGTATGCCACCATCATACAACAACAACAACACAAACGATTCATTCATCAACGTCGAAAACTTCGACACAAACATGGTGATTATATTAGCAGCACTCTTATGCGCATTGATATGCGCTCTAGGATTAAACACCATAGCCCGCTGCGCGATGCGATGCAACAGAGGATTCTCCGAAGAGACACCGGAACAAGCAACAGCAAGGTTGAACAAAACAGGGCTGAAAAAGGCAGAACTGAGTGAAATTCCGGTAACAGTTTACCATACCAGAGAGAATATTCCGGCAACAGAGTGTCCCATTTGTTTAGGGGAGTTTGAGAATGGAGACAGAATTCGAATGTTGCCAAAATGTAATCACGAGTTTCATGTTATGTGTATTGACACGTGGTTGGTGTCACATTCTTCATGTCCCAATTGTCGAAATTCACTTCTTGTTGAGAGAGAATCCAATGTTGTTTGTTCTGATGATGGTGTTGTCGTAGATGGGTTGCCGGAAAATGTTGCGGCGGTGATTGTTGAAGTGGAAGCAAGTTGA 561 0.4314 MKRRFLETEMSMPPSYNNNNTNDSFINVENFDTNMVIILAALLCALICALGLNTIARCAMRCNRGFSEETPEQATARLNKTGLKKAELSEIPVTVYHTRENIPATECPICLGEFENGDRIRMLPKCNHEFHVMCIDTWLVSHSSCPNCRNSLLVERESNVVCSDDGVVVDGLPENVAAVIVEVEAS* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1798 186 PANTHER RING-H2 FINGER PROTEIN ATL74 1 159 - -
Tpr6g1798 186 SUPERFAMILY RING/U-box 87 154 - -
Tpr6g1798 186 SMART ring_2 107 148 IPR001841 -
Tpr6g1798 186 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Tpr6g1798 186 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 159 - -
Tpr6g1798 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 153 IPR013083 -
Tpr6g1798 186 CDD RING-H2_EL5_like 106 149 - -
Tpr6g1798 186 Pfam Ring finger domain 106 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1798 Tpr-Chr6 19335846 19337532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1798 1 169 C3H Transcription Factor Family AT3G10910 51.111 3.00e-52 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1798 K19040 - gmx:100810195 234.572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1798 6 19335846 19337532 Tpr6g1798 6 19335846 19337532 ECH