Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1796 ATGTATATATATGAATCATTGTCTAATAGGCCAAAGTTGAGTATGACCCTTAATGCTCCTTTAGGAATTTCAAATTCCTTTGGTAATAGTAATAATGTTGTTGGTGAAAAGCAACAAAGTAGTAAAACTTCAACTCCAAATCTCTCAGAGTTAGAGAAAAATTTGTCCATGGCATCTTCCATTCATGTTGCACGACAATCACCTATAAGACGACGAAGGAAACACATATCTCCGCGTAATTTGCCTAAGATTACTGATCAAGAATTGCAGCAATTATATGGAGATTTAAATTCCAAAATTGTGCCATTATTTGAGAAGACACTGACTTCCAGTGATGTTGGTCGACTCGGTCGCATGGTTCTTCCAAAACCATGTGTTGAAACATATTTTCCTCCTATTTCTCAACCAGGGGGTATTTACTTACATATTGAAGATGTGAAAGGGAAGAAATTGATGTTTAGGTTTAGATTTTGGCCAAATAATAACAGCAGGATATATGTTTTAGAAGGTGTACTTCCTTGGATTCAGTCTATGCAATTGCAAGCTGGAGATTTTGTAACATTTAGCAGGATGGACCCCGAGGAGAGACTGATAATAGGGTTTCGAAAGGCGTCAATTTCTTCTATAGAGGTGCATGACATTACTATGTCTAAGGGCAAGAAAAGAGAGGAAATGCATCTGCCAAAAGAGCTGGTTCCTAAGAAGAAAAGAAAATGTGACATTGGATCAAAAAGCAAGAGGCAGGTTCTTGATAACCAAGATGCATTGATGCTGAAACTTACTTGGCAAGAGGCTCAACATTTTCTTCATCCACCCCCTACAGTTAATTCAAACATTGTAGTGATTGAGGATCATGTTTTTGAAGAATATGAAGAACCTCCTATCATTGCAAAGAGAGGTATATTCATAAATGGAATGAATGAGCAATGGATACAGTGTGATAAGTGCTCAAAATGGAGGAAGTTGGAATTTCTGGTGCAATGCAATTGTGTTAACAAATCTTGTTCTTAA 1011 0.3689 MYIYESLSNRPKLSMTLNAPLGISNSFGNSNNVVGEKQQSSKTSTPNLSELEKNLSMASSIHVARQSPIRRRRKHISPRNLPKITDQELQQLYGDLNSKIVPLFEKTLTSSDVGRLGRMVLPKPCVETYFPPISQPGGIYLHIEDVKGKKLMFRFRFWPNNNSRIYVLEGVLPWIQSMQLQAGDFVTFSRMDPEERLIIGFRKASISSIEVHDITMSKGKKREEMHLPKELVPKKKRKCDIGSKSKRQVLDNQDALMLKLTWQEAQHFLHPPPTVNSNIVVIEDHVFEEYEEPPIIAKRGIFINGMNEQWIQCDKCSKWRKLEFLVQCNCVNKSCS* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1796 336 Pfam B3 DNA binding domain 104 204 IPR003340 GO:0003677
Tpr6g1796 336 SUPERFAMILY DNA-binding pseudobarrel domain 101 203 IPR015300 -
Tpr6g1796 336 SMART B3_2 104 205 IPR003340 GO:0003677
Tpr6g1796 336 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 5 324 - -
Tpr6g1796 336 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 5 324 - -
Tpr6g1796 336 Gene3D - 82 207 IPR015300 -
Tpr6g1796 336 ProSiteProfiles B3 DNA-binding domain profile. 104 205 IPR003340 GO:0003677
Tpr6g1796 336 CDD B3_DNA 102 203 IPR003340 GO:0003677
Tpr6g1796 336 MobiDBLite consensus disorder prediction 62 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1796 Tpr-Chr6 19306996 19309717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1796 44 322 B3 DNA Binding Superfamily AT4G32010 50.325 3.86e-99 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr6g1796 B3 8e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1796 - - mtr:MTR_7g073240 479.174