Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1756 ATGGAAGGGAACGGGGCATCATCGGCATCTTCTTCATCTTCAAATTCGAGAAGATATGGATTCCCGTCGGCAGCCAGCATAATTCAAGCACCATTATCGGCGCTTCTGGAATACTCTGGTATGCTTCCCTCCAGGTCGAATCAGCATCAGCATCAACCTAACCCTGATTCTGTTCCCAACAATGACGAGGTTTCGATTAGGATCATCGGTTCTACTGAGCAAGATAATCATAGGGAAGAAGAGTCTATACCGTTGGTGGTTAATGATGGGGCTACGACAGCTGGGATGACGTCTTCCCCTTCACATGAGGATGTTGAGCGGACGGGGGGTGGAAATGTGGATGCAGAAGAGGGTGGTGGTGGTGGTGATGGTGGTGGTGCCAATGGGAGAGATTCTTCTTATCAGAGATATGATATTCAACATGCTGCTAGATGGATTGAGCAAGTCTTGCCCTTTTCTTTGCTTCTTTTGGTTGTCTTCATTCGCCAGCATTTGCAAGGGTTTTTTGTTACCATTTGGATTGCTGCTGTCCTTTTCAAGTCAAATGACATTCTGCGGAAACAAACGGCTTTGAAGGGAGAGAGGAAAATGCCTGTTTTGATTGGAATTTCTGTTGCTTTTGCACTTCATGTGGTTGGTGTTTATTGGTGGTATCAAAATGATGATCTAATGTATCCGTTAGTCATGCTTCCTCCCAAGGAGATACCACCTTTCTGGCATGCTATTTTTATCATCATGGTGAATGATACTTTGGCGCGCCAGGCTGCAATGGTATTGAAGTGTATATTGTTAATGTATTATAAGAATAGCAGAGGCCGCAATTATCGTAAGCAGGGGCAAATGTTGACTTTAGTTGAATACCTCCTCCTGCTTTACCGAGCCTTGTTGCCAGCACCAGTTTGGTATCGTTTCTTCTTGAACAAAGAATATGGAAGCCTCTTTTCATCACTGATGACAGGATTGTATCTAACATTTAAGCTTACATCTGTTGTTGAAAAGGTGCAATCTTTCTTTGCTTCAGTGAAAGCATTGTCACGTAAAGAAGTGCACTATGGGGCTTATGCAACATCAGAGCAGGTCATTGCAGCTGGTGATCTTTGTGCGATTTGTCAAGAGAAGATGCATGCTCCAATCTTACTTCGCTGTAAACACATTTTCTGTGAAGACTGTGTATCAGAGTGGTTTGAGAGGGAAAGGACCTGCCCATTGTGCAGGGCTTTGGTAAAACCTGCAGACCTCAGGTCATTTGGTGATGGCTCTACTAGTTTGTTTTTCCAGCTATTCTGA 1287 0.4406 MEGNGASSASSSSSNSRRYGFPSAASIIQAPLSALLEYSGMLPSRSNQHQHQPNPDSVPNNDEVSIRIIGSTEQDNHREEESIPLVVNDGATTAGMTSSPSHEDVERTGGGNVDAEEGGGGGDGGGANGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKMPVLIGISVAFALHVVGVYWWYQNDDLMYPLVMLPPKEIPPFWHAIFIIMVNDTLARQAAMVLKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPAPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFASVKALSRKEVHYGAYATSEQVIAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1756 428 MobiDBLite consensus disorder prediction 91 105 - -
Tpr6g1756 428 SMART ring_2 367 404 IPR001841 -
Tpr6g1756 428 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 6 428 IPR044235 GO:0061630|GO:1904294
Tpr6g1756 428 MobiDBLite consensus disorder prediction 41 71 - -
Tpr6g1756 428 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 428 - -
Tpr6g1756 428 CDD RING-HC_RNFT1_like 366 405 - -
Tpr6g1756 428 ProSiteProfiles Zinc finger RING-type profile. 367 405 IPR001841 -
Tpr6g1756 428 SUPERFAMILY RING/U-box 358 410 - -
Tpr6g1756 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 342 415 IPR013083 -
Tpr6g1756 428 ProSitePatterns Zinc finger RING-type signature. 382 391 IPR017907 -
Tpr6g1756 428 MobiDBLite consensus disorder prediction 41 127 - -
Tpr6g1756 428 Pfam Zinc finger, C3HC4 type (RING finger) 365 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1756 Tpr-Chr6 18935746 18940753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1756 1 428 C3H Transcription Factor Family AT5G01960 71.132 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1756 - K22379 gmx:100818546 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1756 6 18935746 18940753 Tpr6g1756 6 18935746 18940753 ECH