Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1738 ATGGCTGCTTGTGCTTTGTTCAATGGTGGTGGAAATAGTGATGAAACCAATTTGAGCAACAACAACAATAATAGTACTGCTTCTAACTCCAGCAACATAAGCAGTGAAGATTTACACCACAACATGTTACAAACACAACCTCATCATTCTGAAAGAAAATTACTCAGAAAAAGAATGGCTTCTGAAATGGAACTTCAACTTCACAACAACAACAACAATTCTTCTTCTGATAATTATCATAGATTTCCTCGTCGCAACAACAACAACATATCCTCATTGAATTGCTCTTTACCCTCAGCCACACAAAAAGGTGTCACTACTACAACAACAACAACAACATTATTAGCCGCAGGTACAAACAATAGTACTAGTACTAATAATAATAACTATCATTATCATAACAATAATATTAATAATAATAATAATAATAGTAATGTTGCTTTGTCACGAGATAACGTTTGTATTCAAAATTACCCAACTGTATCCGTCACAACCAACTACTCCACTATGTTGCTACCTTCTTCTTCTTCCAACAATCTCAACAATTCCTCAAACTCTGCTTCAAACTACACCCATTTTCAACCACCACTTGTAGAAGAACAAAACAACCCTCTTCCTTCAATCTGTGGATTCTCTGGTTTACCACTTTTTCCATCTCAAAACCAAAACAACAGAAACAATGGTAGTAGTAACATAATAACTTGTGCAGCTGCTAATATTGTTGATGTTGTTTCACCTTCTATGATGGAAGAAACCTCAGCTACAACAAATTGGATTGATGGTATTCTAAAAGATCTTATTCATACTTCTAACAGTGTTTCCATTTCTCAACTCATCAATAATGTTAGAGAGATTATATATCCTTGTAATCCAAATCTTGCTCTTGTTCTTGAACATAGACTTCGTCTTCTCACTGAAACTATACCACAAAACTGTTCATCATCTGTTGTTACAGAGAGAAAAAGAAACAACAACACAGAACAACAACAACAACAACAACAACAAAGTGTTGTTAATGTTAATGTTTTAGCAGCTCCTAATGTTAATTCCTCAGTGAAACTTATGAATCGTGTTGATGACATTGTTCAAACAAGTTTACATTTTTCTGATTCATCACATGTTTTGAATCAAAATCAAAACATTTTTCCTAATTGGGTTGTGCCTCAAAATCAAATCAATAGCAACAACAATAACAACCCTTCAGTTTCATCGGTTAATTTACCTTCACAACAAGATCAACAACATCAAGAACATCATCAAGAAGATCTTGCACCTGCAAGAACAGCAGAAACTACTTCTGCTGAGTTGGCACTAACAAGAAAGAAGAAAGAGGAGATTAAAGAACAGAAGAAGAAAGATGAAGAAGGTTTACACCTTCTAACACTACTTCTCCAATGTGCAGAAGCTGTATCAGCAGAGAATCTAGAACAAGCAAACAAGATGTTACTCGAGATTTCGCAGCTCTCGACGCCTTTCGGTACATCAGCACAAAGAGTAGCAGCTTATTTCTCAGAAGCAATTTCAGCAAGACTAGTGAGTTCATGTTTAGGAATCTACACAACACTTCCACCACACATTACACCACATAATCAAAAAGTTGCTTCAGCTTTTCAAGTATTCAATGGAATTAGCCCATTTGTGAAATTCTCTCATTTCACTGCTAATCAAGCTATACAAGAAGCATTTGAAAGAGAAGAAAGAGTTCACATAATAGATCTTGATATAATGCAAGGTTTACAATGGCCTGGTTTGTTTCATATTCTTGCTTCGAGACCCGGTGGACCGCCTTATGTGAGACTCACTGGTTTAGGTACTTCCATGGAAACACTTGAAGCTACTGGTAAACGTTTGTCTGATTTTGCATCTAAACTTGGTCTTCCTTTTGAGTTCTTTCCTGTTGCTGAGAAAGTTGGAAACATTGATCCTGATAAGCTTAATGTTAGTAAATCAGAAGCTGTTGCTGTTCATTGGTTGCAACATTCTTTATATGATGTTACTGGATCAGATACAAACACTTTGTGGCTCTTGCAAAGGTTGGCACCTAAAGTGGTAACAGTAGTGGAACAAGACTTAAGCAATGCAGGTTCATTTTTAGGAAGGTTTGTGGAAGCAATACATTACTACTCAGCACTATTTGATTCTCTTGGTTCAAGCTATGGTGAAGAGAGTGAAGAGAGACATGTCGTGGAGCAACAGCTATTATCACGGGAGATTCGTAATGTACTTGCAGTTGGAGGACCATCAAGGAGTGGTGAAATAAAGTTTCATAATTGGAGAGAAAAACTTCAACAGTGTGGTTTTAGAGGTATCTCTTTGGCTGGTAATGCTGCTACTCAAGCTAGTCTTCTTCTTGGCATGTTCCCTTCTGAAGGGTATACTTTAGTTGAGGATAATGGTATCCTAAAACTTGGTTGGAAAGATCTTTGTTTACTTACTGCTTCTGCTTGGAGACCTCCTTTTCATACCAATAATGTCATTCCACATCATAACTAA 2493 0.3646 MAACALFNGGGNSDETNLSNNNNNSTASNSSNISSEDLHHNMLQTQPHHSERKLLRKRMASEMELQLHNNNNNSSSDNYHRFPRRNNNNISSLNCSLPSATQKGVTTTTTTTTLLAAGTNNSTSTNNNNYHYHNNNINNNNNNSNVALSRDNVCIQNYPTVSVTTNYSTMLLPSSSSNNLNNSSNSASNYTHFQPPLVEEQNNPLPSICGFSGLPLFPSQNQNNRNNGSSNIITCAAANIVDVVSPSMMEETSATTNWIDGILKDLIHTSNSVSISQLINNVREIIYPCNPNLALVLEHRLRLLTETIPQNCSSSVVTERKRNNNTEQQQQQQQQSVVNVNVLAAPNVNSSVKLMNRVDDIVQTSLHFSDSSHVLNQNQNIFPNWVVPQNQINSNNNNNPSVSSVNLPSQQDQQHQEHHQEDLAPARTAETTSAELALTRKKKEEIKEQKKKDEEGLHLLTLLLQCAEAVSAENLEQANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYTTLPPHITPHNQKVASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMETLEATGKRLSDFASKLGLPFEFFPVAEKVGNIDPDKLNVSKSEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNAGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGEIKFHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFHTNNVIPHHN* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1738 830 Coils Coil 429 449 - -
Tpr6g1738 830 PANTHER PROTEIN SCARECROW 174 819 - -
Tpr6g1738 830 Pfam GRAS domain family 460 817 IPR005202 -
Tpr6g1738 830 MobiDBLite consensus disorder prediction 401 432 - -
Tpr6g1738 830 ProSiteProfiles GRAS family profile. 450 817 IPR005202 -
Tpr6g1738 830 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 174 819 IPR005202 -
Tpr6g1738 830 MobiDBLite consensus disorder prediction 314 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1738 Tpr-Chr6 18755967 18759789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1738 440 818 GRAS Transcription Factor Family AT3G54220 85.302 0.0 670
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tpr6g1738 GRAS 5.8e-124 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1738 - - gmx:100803919 938.717