LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr6g1729	ATGGAAGGGAGAGAAGGTAACAACTCAGGGGTAACAGTGATAGGAGCAGAAGCTCCATCAACTTATCATATGGCACCAAGGAGTGAAGCTCCAACTCAACATGGTGCTGTTCCTGAATCAGGAAGTGGAGCTATCGGTGTCTCACCGGTGAATGTAGGATTGGATGGAGGAACAATTAAGAAGAAAAGAGGTAGGCCAAGGAAATATGGGCCAGATGGGTCGGTTGCTGCTGTGGCGTTGTCCCCGTTGCCAATCTCATCTTCAGCTGCTTTTGTTAATGAATTTTCAACCGCGAAGCAGGCGAAACCGAAGGGAATGGAGTTTAAGCAGTCGAAAAAAGGTGGAGTTGATCCTCTAGGTGACTCGGTTGGTACCAACTTTATGCCGCATATCATTACCGTCAATGCTGGCGAGGACATTACAATGAAAGTTATATCTTTTTCGCAACAAGGACCACGAGCTATATGCATCCTATCTGCTAGTGGCGTGATTTCAAATGTTACACTTCGTCAGCCTGATTCTTCTGGCGGTACTTTGACCTATGAGGGCCGTTTTGAGATACTCTCACTATCTGGATCATTCATGCCTACTGAGAGCCAAGGAACAATAAGCCGGTCCGGTGGAATGAGTGTTTCTTTGTCAAGCCCTGATGGCCGTGTTGTAGGTGGTGGAGTTGCCGGTCTTCTTGTCGCTGCCACTCCTGTGCAGGTGGTGGTTGGAAGTTTTCTGCCAAGTAACCAACAAGACCAGAAAACGAAGAAGCCAAAATCTGATTATGCAACAGCTACCGTTACCGCACCTATTCCAGTGTCTTCGGAACCACCTTCAACCAATGGTGAAAGGATAGATGTCATGTGTGGACACCCAATGCAAAATTCCGGAACATTTAACTCGAACTTTACTCCTCCCTCGGCCTTTCGCAGAGAAAACTGGGCTAACATGCACTCCGTGCCGGACTCAATGAAGTCTGCAACTGATATTAACATATCTTTGCCTGATAATTAA	1005	0.4687	MEGREGNNSGVTVIGAEAPSTYHMAPRSEAPTQHGAVPESGSGAIGVSPVNVGLDGGTIKKKRGRPRKYGPDGSVAAVALSPLPISSSAAFVNEFSTAKQAKPKGMEFKQSKKGGVDPLGDSVGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSASGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTESQGTISRSGGMSVSLSSPDGRVVGGGVAGLLVAATPVQVVVGSFLPSNQQDQKTKKPKSDYATATVTAPIPVSSEPPSTNGERIDVMCGHPMQNSGTFNSNFTPPSAFRRENWANMHSVPDSMKSATDINISLPDN*	335

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr6g1729	334	Pfam	Plants and Prokaryotes Conserved (PCC) domain	129	242	IPR005175	-
	Tpr6g1729	334	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9	1	333	IPR039605	GO:0003680
	Tpr6g1729	334	CDD	DUF296	129	242	IPR005175	-
	Tpr6g1729	334	Gene3D	-	129	262	-	-
	Tpr6g1729	334	ProSiteProfiles	PPC domain profile profile.	124	265	IPR005175	-
	Tpr6g1729	334	PANTHER	AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN	1	333	-	-
	Tpr6g1729	334	SUPERFAMILY	AF0104/ALDC/Ptd012-like	127	246	-	-
	Tpr6g1729	334	MobiDBLite	consensus disorder prediction	1	44	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr6g1729	Tpr-Chr6	18655982	18664070	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr6g1729	6	272	AT-hook Motif Nuclear Localized (AHL) Family	AT4G12080	57.285	1.04e-99	296

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr6g1729	-		-	gmx:100777213	484.182