Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1727 ATGGATTTGAGATATGGTGGTAGAGATGGTGGTGATGGACCTTGTGGTGCTTGTAAGTTTCTAAGGAGAAAATGTGTGAAAGGTTGTTGCATATTTGCACCATATTTTGAGTCATCAGGACAAGGAAGTGCTCATTTTGCAGCAGTTCATAAGGTGTTTGGTGCTAGCAATGCAGCTAAGTTACTGATGCGGATTCCAGTTCATAAACGTCTTGATGCTGTTGTTACTCTTTGTTATGAGGCTCTTGCTAGAGCTACTGATCCTGTTTATGGTTGTGTTGCTCACATCTTTGCTCTTCAACAACAGGTTGTGGAGTTGCAAGCAGAGTTAGCTTATGTACAAGCCCGTCTTTCAATATTGAATCGCATATCTCAAGAACCTCAATTTCAACAACCTCAGAACTCTTCAATATCCCCAACAATGCATTCCTCATCACTTCATCATTTGTCATCAAACAATGAAACTTCTTACATGTCCATGCAAAATCATCATCCAATACCTTTTGAATTAAGCAACTTTCACAATAATCCATCATACTATTCCTATCATCAACAACTCAATGACCAAGAACTCCAAGCTAATTTGCCATGA 591 0.3909 MDLRYGGRDGGDGPCGACKFLRRKCVKGCCIFAPYFESSGQGSAHFAAVHKVFGASNAAKLLMRIPVHKRLDAVVTLCYEALARATDPVYGCVAHIFALQQQVVELQAELAYVQARLSILNRISQEPQFQQPQNSSISPTMHSSSLHHLSSNNETSYMSMQNHHPIPFELSNFHNNPSYYSYHQQLNDQELQANLP* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1727 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 19 9 164 - -
Tpr6g1727 196 PANTHER LOB DOMAIN CONTAINING PROTEIN 9 164 - -
Tpr6g1727 196 Pfam Lateral organ boundaries (LOB) domain 14 114 IPR004883 -
Tpr6g1727 196 ProSiteProfiles LOB domain profile. 13 117 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1727 Tpr-Chr6 18638540 18642158 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1727 6 164 AS2 family AT4G00210 59.119 1.68e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr6g1727 LOB 2.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1727 - - mtr:MTR_7g075230 310.071