Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1726 ATGAGTCTAAACTCTAGTGGCAGCGGCAGTAACGGTGGTGGTAGTGGGAGTGGCGGCAATAGCGGTAGCCCTTGTGGGGCATGCAAGTTTTTAAGGAGGAAATGTGTGTCAGGGTGTATTTTTGCTCCGTACTTTGATTCGGAGCATGGCACAACCCATTTCGCGGCTGTGCATAAAGTTTTTGGGGCTAGTAATGTATCCAAACTCCTTCTTGGCATTCCAATTAATAGGAGGCTTGATGCTGCAGTCTCTCTTTGTTATGAAGCTCAAGCAAGATTGAGAGATCCTATCTATGGATGTGTTGGTCACATCTTTGCTCTCCAGCAACAGGTGCTGAGTCTACAAGCTGAACTCTCCTACATGCAAAGCCACATTAATTCATCAGAGTTAACCCAACCACCTCTACCACCACCACAGGCGGCCGTAGCACCAGCCGTCTTCTCCTTTGCCGATCTTCCACCACCCACCGCCACAACTATGCCGGTGACCTATGACATGTCTACACTTTTTGATCCTATGGGCCAACCTTCATTGGCTATGCAACACCAGAGGCCCAATATTGACCCACGTCAATATTTACCTGCTCGTGGCCCAACATCAACCACTAGTTCTCACAGACAAATTGGGTCTTCATCTGCACCATCTTCCAATGCTTCATCTTCTCCTTCATTTTCCAAATTTTCTAAATGA 690 0.4739 MSLNSSGSGSNGGGSGSGGNSGSPCGACKFLRRKCVSGCIFAPYFDSEHGTTHFAAVHKVFGASNVSKLLLGIPINRRLDAAVSLCYEAQARLRDPIYGCVGHIFALQQQVLSLQAELSYMQSHINSSELTQPPLPPPQAAVAPAVFSFADLPPPTATTMPVTYDMSTLFDPMGQPSLAMQHQRPNIDPRQYLPARGPTSTTSSHRQIGSSSAPSSNASSSPSFSKFSK* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1726 229 ProSiteProfiles LOB domain profile. 23 125 IPR004883 -
Tpr6g1726 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 4 203 - -
Tpr6g1726 229 MobiDBLite consensus disorder prediction 195 229 - -
Tpr6g1726 229 MobiDBLite consensus disorder prediction 179 229 - -
Tpr6g1726 229 Pfam Lateral organ boundaries (LOB) domain 24 122 IPR004883 -
Tpr6g1726 229 PANTHER LOB DOMAIN CONTAINING PROTEIN 4 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1726 Tpr-Chr6 18620114 18630258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1726 27 192 AS2 family AT2G45420 59.770 5.83e-64 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr6g1726 LOB 4.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1726 K21994 - gmx:100777737 244.973