Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1718 ATGACTTCATCTCAGGAAAAACGCTACCGTTCCATCTTCGAACTTCCATCTAACTACTTCCACTCTTCTCGTCTTCTCCCTTCTCCTCATTCCTCACTTCCCAACCACCACAACCAAACTCTTCAACCCCCCTCAAACCACCACGTCGATGATATTCAAAACGCCGTCGTTTCCGGTCCTAGGTTGACCTGCAATACCTGCAAGGCTCACTTTGATTCTCTTCAAGACCAACGTTCTCACTTCAAATCGGATATTCATCGATTCAATGTGAAGCTGACAATTGCTGGGAAAAATATTGTGAAGGAAGAGGATTTTGAGGACCTGACAACTGATTTTGTCAAAGACTGTGATGTGTCAAGTATATCTGGATCAGAAAGCGATGATGATGACAGTGAAAATGAGTCTCGAGGTCAAATTGAAGTGCGTGGTAAATCTGGTGAAAGCTTTAAACAAAAGCTATTCATCTGTCTTCAGACAGGGCAGAGAGTTTCTTTATGGAAGAGTTTGATTATGAATGTGAGCGAAAATGTGGCGTATGAGGACGAACAAGTGCAGAAAAATTTGGTTGAGAGGTTGAAATCTCTAACTGTTGAGCCCAGGGATAACACCCGGTTAAGGATTGTTCTGCTGGCATCCGGTGGGCACTTTGCGGGCTGTGTCTTTGATGGTGATACGGTTGTGGCTCAAAAGACATTTCACAGATATGTTGTGAGGGCCAAGGCTGGTAAAAAACAGTCATCTAAAGATGCTTCTGGCAGGACTGTACATTCTGCTGGTGCTTCACTTCGTCGTTACAATGAACTTGCATTGAAAAAGGAAGTTCACGAACTGCTTGCTGCTTGGAGACCTTATTTTGATGCATCTATTTGCATTTTTATTCACGCACCTTCTAGTAGTCGTCAACTTCTTTATGATGGAGAAAAGCCATGTTTTACCAATCCGCAATGTCTTAGAAATATTGCTATGATTGTCCGCAGGCCCACTCTTAGGGAAGCCAAGCGCATATATGGCCAGTTGACCCTAGTATCCTATGAAGCAGATGAGAAGGAAATTTTACAAAGCAACCAGCAGGATGTGGTGCCAACTCGCATTGCTAAAAGAAATGACACCCCACCTGTCAGCAAAGTGGACATGGCTGGGATGGATGAAAACAATAAAGCTGAAGCTGGTTCCAGTAACAAAAATGATGAACCTCTTATTTCGAGTAATGACGGAAGTGAGAATGAGTTACCTGTTAAATCAACTCCTTTACATCAAGCAGCACAATCTGGTGACTCTGAAAAGGTTATGGAACTCTTGGAACAGGGCTTGGATCCATGCATTAAAGATGAAAGGGGACGGACTCCATATATGTTGGCACCTGACAAGGAAGTCAGGAACACTTTCAGAAGGTTTATGGCTTCAAATCTTGACAAATGGGATTGGAATGCTGCAAAAGTTCCGAGTGCATTGACCAAAGAATTGGAAGAATCACAAGCTGCTAAGCAGGCAGAAAAAGATGCCAAGAAAAAAGCTAGAGCAAAAGAATTAAAGAAATTACGTAAAGCAAAAGAAAATAAGGCTCAGGCCGAAGCTGCTGAAAAGCAAAAGATGGCTTCGACATCTGCTACCGGACAATCTCAACCAAAAAGTGGTGTCAAATTATCAAAAGAGGAGGAAATGAAAAGAGCACAAGATGAAGAAAGAGAAAAGAGAGCAGCTGCAGCAGAGAGAAGAATGGCTGCCCTCAAAATTCAAGCTAATAATTCAACTACTTCAGAGGCTAATAAAAATGGATTAGCCGGCGATATATTATGTTCCTGTTGTAATTCATCACTTGCTGGTAAAGTTCCTTTCCACCGGTATAATTACAAATACTGCAGCACTTCATGCATGCATCTACACAAAGAGATCCTTGAAGATGGATGA 1908 0.4224 MTSSQEKRYRSIFELPSNYFHSSRLLPSPHSSLPNHHNQTLQPPSNHHVDDIQNAVVSGPRLTCNTCKAHFDSLQDQRSHFKSDIHRFNVKLTIAGKNIVKEEDFEDLTTDFVKDCDVSSISGSESDDDDSENESRGQIEVRGKSGESFKQKLFICLQTGQRVSLWKSLIMNVSENVAYEDEQVQKNLVERLKSLTVEPRDNTRLRIVLLASGGHFAGCVFDGDTVVAQKTFHRYVVRAKAGKKQSSKDASGRTVHSAGASLRRYNELALKKEVHELLAAWRPYFDASICIFIHAPSSSRQLLYDGEKPCFTNPQCLRNIAMIVRRPTLREAKRIYGQLTLVSYEADEKEILQSNQQDVVPTRIAKRNDTPPVSKVDMAGMDENNKAEAGSSNKNDEPLISSNDGSENELPVKSTPLHQAAQSGDSEKVMELLEQGLDPCIKDERGRTPYMLAPDKEVRNTFRRFMASNLDKWDWNAAKVPSALTKELEESQAAKQAEKDAKKKARAKELKKLRKAKENKAQAEAAEKQKMASTSATGQSQPKSGVKLSKEEEMKRAQDEEREKRAAAAERRMAALKIQANNSTTSEANKNGLAGDILCSCCNSSLAGKVPFHRYNYKYCSTSCMHLHKEILEDG* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1718 635 Coils Coil 488 533 - -
Tpr6g1718 635 MobiDBLite consensus disorder prediction 528 545 - -
Tpr6g1718 635 SUPERFAMILY Ankyrin repeat 414 468 IPR036770 -
Tpr6g1718 635 MobiDBLite consensus disorder prediction 404 422 - -
Tpr6g1718 635 MobiDBLite consensus disorder prediction 404 427 - -
Tpr6g1718 635 ProSiteProfiles Ankyrin repeat profile. 412 444 IPR002110 GO:0005515
Tpr6g1718 635 ProSiteProfiles Ankyrin repeat region circular profile. 412 444 - -
Tpr6g1718 635 Pfam Bacteroidetes VLRF1 release factor 207 344 IPR041175 -
Tpr6g1718 635 MobiDBLite consensus disorder prediction 546 568 - -
Tpr6g1718 635 Coils Coil 547 570 - -
Tpr6g1718 635 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 631 - -
Tpr6g1718 635 Pfam Vms1-associating treble clef domain 599 630 IPR041540 -
Tpr6g1718 635 ProSitePatterns Zinc finger C2H2 type domain signature. 64 86 IPR013087 -
Tpr6g1718 635 MobiDBLite consensus disorder prediction 120 143 - -
Tpr6g1718 635 MobiDBLite consensus disorder prediction 512 568 - -
Tpr6g1718 635 Gene3D - 410 540 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1718 Tpr-Chr6 18520391 18527296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1718 7 585 C2H2 Transcription Factor Family AT1G01930 51.560 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1718 K26089 - gmx:100527709 821.617