Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1714 ATGAGTTTTTTGCAGGGAATCATTGATTCCTTTAACTCTGTCTTCTCTCCACAATCCATCGATCAAAATTCTTCTTCTTTATCAATGGATGCTTCTCCTTCTTCGGTTTCCAACGAACGCGTCGCTTACAAGCTCAAAGGCTACTACGATTTAGCCACTCAAGAGATCGATAAAGCTGTTAGGGCTGAAGAATGGGGATTGGTCGATGACGCTATTCTTCACTACAGGAATGCCCATAGGATCCTTCTCGAAGCTAATTCCACTACTGTTCCTTCCTTCATCACTTCAAGTGAGAAACAAAAGGTACAATCATATCGTCAAAAGATATCAAAATGGCAGGGACAAGTATCTGAGAGATTGCAGGCTCTCAATAGACGAGCAGGTAGCTCCGTTGCCAATCAGAGCACTTCAAACGTTGCACCAACTGCTGCAGTTCCAACCAAACTATCAAATACTACAAAAAAAGTGTTACAAAAGAATCCTCAAAGAAAAGATGAGGTGAATAAAGTTCAAAACCCGAAATCTAGTCAAACATCTGGTGAAAATTATGACACAAAACTGGTTGAAATGATTAACACTGCCATTGTAGATAGAAGTCCTTCTGTCCGGTGGGACGATGTTGGTGGCCTTGAAAAGGCAAAGCAAGCTTTAATGGAGATGGTTATTTTACCAACTAAGAGAAGAGACTTGTTCACTGGTCTTCGAAGGCCAGCTAGAGGTTTGCTTCTTTTTGGTCCACCTGGTAATGGTAAGACCATGCTTGCCAAAGCAGTTGCTTCAGAATCAGAAGCAACATTTTTTAATGTCACGGCAGCGTCCTTGACGTCAAAATGGGTTGGCGAAGCTGAAAAGCTTGTACGGACACTATTCATGGTAGCTACATCGAGACAGCCATCTGTAATTTTCATTGACGAGATTGATAGTATAATGTCAACAAGGACGACAAATGAAAATGAGGCCAGCAGACGATTAAAATCAGAATTCCTTATCCAGTTTGATGGGGTGACATCCAATCCTGATGATATCGTGATTGTAATTGGTGCGACCAATAAGCCACAGGAACTGGATGATGCAGTTCTCAGGAGACTGGTTAAGAGAATATACGTACCTTTACCAAATGAAAATGTTCGGAAACTTCTGCTAAAACACAAACTCAAGGGTCAAGCATTCTCCTTACCTAGTAGAGATCTAGAGATGCTTGTAAAAGAGACTGAAGGATACTCTGGAAGTGATCTGCAAGCGCTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGCTGGGTCCTAACATTCTTACCGTCAAGGCAAATCAGGTAAGAGGACTGAGGTATGAGGACTTCAAGAAAGCAATGGCTGTGATCAGACCAAGTTTAAACAAAAGTAAATGGAAAGAGCTTGAGAAGTGGAATGAAGAATTTGGCTCAAATTGA 1431 0.4151 MSFLQGIIDSFNSVFSPQSIDQNSSSLSMDASPSSVSNERVAYKLKGYYDLATQEIDKAVRAEEWGLVDDAILHYRNAHRILLEANSTTVPSFITSSEKQKVQSYRQKISKWQGQVSERLQALNRRAGSSVANQSTSNVAPTAAVPTKLSNTTKKVLQKNPQRKDEVNKVQNPKSSQTSGENYDTKLVEMINTAIVDRSPSVRWDDVGGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVTAASLTSKWVGEAEKLVRTLFMVATSRQPSVIFIDEIDSIMSTRTTNENEASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPNENVRKLLLKHKLKGQAFSLPSRDLEMLVKETEGYSGSDLQALCEEAAMMPIRELGPNILTVKANQVRGLRYEDFKKAMAVIRPSLNKSKWKELEKWNEEFGSN* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1714 476 MobiDBLite consensus disorder prediction 127 157 - -
Tpr6g1714 476 ProSitePatterns AAA-protein family signature. 343 362 IPR003960 GO:0005524|GO:0016887
Tpr6g1714 476 CDD MIT_spastin 45 123 - -
Tpr6g1714 476 SMART smart 45 122 IPR007330 -
Tpr6g1714 476 Gene3D - 200 470 IPR027417 -
Tpr6g1714 476 PANTHER BNAC04G50250D PROTEIN 5 476 - -
Tpr6g1714 476 SMART AAA_5 237 373 IPR003593 -
Tpr6g1714 476 Pfam ATPase family associated with various cellular activities (AAA) 241 371 IPR003959 GO:0005524|GO:0016887
Tpr6g1714 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 473 IPR027417 -
Tpr6g1714 476 Pfam AAA+ lid domain 396 427 IPR041569 -
Tpr6g1714 476 Gene3D - 37 127 - -
Tpr6g1714 476 MobiDBLite consensus disorder prediction 127 183 - -
Tpr6g1714 476 CDD AAA 226 371 - -
Tpr6g1714 476 Gene3D - 372 454 - -
Tpr6g1714 476 PANTHER AAA DOMAIN-CONTAINING 5 476 - -
Tpr6g1714 476 Pfam Vps4 C terminal oligomerisation domain 442 474 IPR015415 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1714 Tpr-Chr6 18470410 18476034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1714 181 426 Calmodulin-binding Proteins AT3G56690 41.569 3.08e-49 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1714 K13254 - gmx:100780946 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1714 6 18470410 18476034 Tpr6g1714 6 18470410 18476034 ECH