LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr6g1704	ATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAAATCAACCGGCAAGTTACTTTCTCAAAAAGAAGAAATGGCTTATTGAAAAAAGCTTATGAACTCTCAGTTCTATGTGATGCTGAAATTGCCCTAATCATTTTCTCAAGCCGTGGCAAACTCTCTGAATTTGGAAGCTCAACTTCTGGCATTGGCAAAACCCTAGAACGATATCAGAGATGCTCTTATACTTCTCAAAATGATAATGATAATGAACATGAAACTCAGAACTGGTACCAAGAGATCTCAAAGCTAAAGGCAAAGTATGAGTCACTTCAAAAGTCTCAAAGGCAATTGCTAGGGGAAGATCTTGGACCATTGAACATTAAAGAGTTACAAAATCTTGAGAAACAACTTGAAGGAGCTTTAGCACAAGCTAGGCAGAGGAAGACACAAATTATGATTGAACAAATGGAAGAGCTTAGGAAAAAGGAACTTCACCTTGGAGAAATAAATAAGCAACTTCGATTCAAGCTTGAATCAGATGGATTTAATCTGAAAGCATATGAAAGCATGTGGAACACTACTAATTCTGCTACTGTTGCTGGAGGAGGCAACTTTCCTTTTCAGCCTTCTGAAACCAATACCATGGATTGCCAACCTGAACCTTTCTTGCAAATAGGGTACCAAAACTATGTTCAAGCTGAACAATCCAGTGCTCCAAAGAACATGGTTGGTGAGACTAGCTTTATCCAAGGATGGATGCTTTGA	750	0.388	MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEIALIIFSSRGKLSEFGSSTSGIGKTLERYQRCSYTSQNDNDNEHETQNWYQEISKLKAKYESLQKSQRQLLGEDLGPLNIKELQNLEKQLEGALAQARQRKTQIMIEQMEELRKKELHLGEINKQLRFKLESDGFNLKAYESMWNTTNSATVAGGGNFPFQPSETNTMDCQPEPFLQIGYQNYVQAEQSSAPKNMVGETSFIQGWML*	250

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr6g1704	249	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Tpr6g1704	249	Coils	Coil	88	115	-	-
	Tpr6g1704	249	SUPERFAMILY	SRF-like	2	92	IPR036879	GO:0003677\|GO:0046983
	Tpr6g1704	249	PANTHER	MADS-BOX TRANSCRIPTION FACTOR 17	1	235	-	-
	Tpr6g1704	249	PANTHER	MADS BOX PROTEIN	1	235	-	-
	Tpr6g1704	249	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Tpr6g1704	249	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Tpr6g1704	249	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Tpr6g1704	249	Gene3D	-	13	98	IPR036879	GO:0003677\|GO:0046983
	Tpr6g1704	249	CDD	MADS_MEF2_like	2	80	IPR033896	GO:0000977\|GO:0045944
	Tpr6g1704	249	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Tpr6g1704	249	ProSiteProfiles	K-box domain profile.	88	178	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Tpr6g1704	249	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Tpr6g1704	249	Pfam	K-box region	83	172	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Tpr6g1704	249	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Tpr6g1704	249	Coils	Coil	122	145	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr6g1704	Tpr-Chr6	18347050	18353203	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr6g1704	1	249	MADS-box Gene Family	AT2G45650	63.529	4.39e-112	320

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Tpr6g1704		K-box	5.2e-30	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr6g1704	K09264		-	tcc:18614251	362.844

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr6g1704	6	18347050	18353203	Tpr6g1704	6	18347050	18353203	ECH
	Tpr7g1778	7	20506415	20513296	Tpr6g1704	6	18347050	18353203	ECH
	Tpr5g2719	5	49361991	49368331	Tpr6g1704	6	18347050	18353203	ECH