Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1696 ATGAACACTTCAAACCCAACACCATCTTCTCCACCGGAATCCACCGCCGACGACACCGAACCATTCCTCGTCCGAACTCGCCGTTCCCTCCACCGCACACCACCACCACTCCGTACCGCTTCTCGTTTCATCCGGCGTGCAAGCTCACAACGTATGATGCTCCGTGAACCATCCATACGTGTCCGAGAGAGGGCGGCAGTTGAGGTTGAAGAACGGCAGAGGGAATGGGCTTATTCAAAACCAGTGGTAGCACTTGACATAGCGTGGAACTTGTCGTTTCTCGTTGTTAGTGTTGTCGTTTTGGGTTTGAGTAATAAAGAGGAACCTTGTGTGCCTCTTAGGGTGTGGATTTTGGGGTACTTGTTTCAGGGATTGGTTCATTCGTTGTCTGTTGTTTCAGAATTTAGAAGAAGGAGAATGGATAGTGTTTTGGAAAATTCTTCTGATGATTTGGAGAGTGGTCCAAGGTGGAGTTTGAGTTCTGAGAGTGATTCTGATGTTGATTCTCAGCAGTTTTCAGATAATGAGGAAAATAGTATCATGAAGCACATAGAGTCTGCAAACACCATTCTATCATTCATATGGTGGATTCTTGGGTTCTACTGGGTAACTGCTGGTGGTCAGAGTTTGACAAAGGATTCACCTCAGCTTTACTGGCTCTGTATCACATTTCTTGCTTTTGACGTTGTGCTTGTAGTGGTTTGTGTTGCTGTTGCATGTCTCGTTGGAATTGCTGTTTGCTTTTGTCTTCCATGCATACTTGCGATTTTGTATGCAGTGGCAGATCAGGAAGGAGCAACCAAGGAAGAGATTGACCAGTTGCCAAAATATAAGTTCCGAATGATAAAGGAGTTTAAGAAAGAAGGCGATGGCGAAGAATCATCCAGAGGAGTGATGACAGAATATGACAGTGATTCAGCATCCGAGCATGTTATTGCCGTAGAAGATGCAGAGTGCTGTATCTGCCTCTCTGCCTATGATGATGGTGCTGAACTTAGGGAACTTCCTTGCAATCATCATTTTCATTGCACATGCATTGATAAATGGCTGCTAATCAATGCTACCTGCCCTCTCTGCAAATTTAACATTTTGAGCACCGATAACCTCCATGAAGAAGTTTGA 1122 0.4492 MNTSNPTPSSPPESTADDTEPFLVRTRRSLHRTPPPLRTASRFIRRASSQRMMLREPSIRVRERAAVEVEERQREWAYSKPVVALDIAWNLSFLVVSVVVLGLSNKEEPCVPLRVWILGYLFQGLVHSLSVVSEFRRRRMDSVLENSSDDLESGPRWSLSSESDSDVDSQQFSDNEENSIMKHIESANTILSFIWWILGFYWVTAGGQSLTKDSPQLYWLCITFLAFDVVLVVVCVAVACLVGIAVCFCLPCILAILYAVADQEGATKEEIDQLPKYKFRMIKEFKKEGDGEESSRGVMTEYDSDSASEHVIAVEDAECCICLSAYDDGAELRELPCNHHFHCTCIDKWLLINATCPLCKFNILSTDNLHEEV* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1696 373 SMART ring_2 319 359 IPR001841 -
Tpr6g1696 373 Pfam Ring finger domain 318 360 IPR001841 -
Tpr6g1696 373 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 373 - -
Tpr6g1696 373 PANTHER TARGET OF ERK KINASE MPK-1 7 373 - -
Tpr6g1696 373 MobiDBLite consensus disorder prediction 1 16 - -
Tpr6g1696 373 SUPERFAMILY RING/U-box 309 366 - -
Tpr6g1696 373 CDD RING-H2_RNF111_like 318 362 - -
Tpr6g1696 373 ProSiteProfiles Zinc finger RING-type profile. 319 360 IPR001841 -
Tpr6g1696 373 MobiDBLite consensus disorder prediction 1 28 - -
Tpr6g1696 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 366 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1696 Tpr-Chr6 18230762 18236695 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1696 9 367 C3H Transcription Factor Family AT1G68070 48.343 7.49e-113 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1696 - - gmx:100795425 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1696 6 18230762 18236695 Tpr6g1696 6 18230762 18236695 ECH