Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1684 ATGGTGGAAGATGCTGTTGCAGTTGATGCAAGTTGTTCAACAGAAGATTGGTTGTTACATGCAAAGGAACTTGTTCCTATTGCTCTTGATAAAGCAAGAGAGGTTAAAGGTTTTCCTACTAGATGGAAAATGATCATTTCTAGATTAGAACAGATTCCATCCATGTTATCAAATTTATCAAGCCATCCATGTTTCTCAAAGAATGCTCTTTGCAAGGAGCAATTGCAGGCTGTGTCGAATTCCCTCAGAGATGCGATCGAATCAGCTGAATTGTGTTTGAAGGAGAAATATGAAGGTAAGCTTCAGATGCAGAGTGATCTGGATGCATTAATCGGTAAAATGGATTTGAATTTACGAGACTGTGGACTTTTGATCAAAACTGGTATGCTCGGCGAGGCTACTTTGCCGTTGACAGTGGCATCTGTGTCAGGTTCTGTGGAACAATCAGATTCTGCAGCACACAACAACATAAGGGAGTTGCTCGCGCGCCTTCAGATCGGTCACTTAGAAGCGAAACACAAAGCTTTGGACAGTGTTGTTGAAGTTATGAAAGAGGATGAGAAGAATGTTTTGGCTGTTATGAGTAGGAGTAATATTGCTGCACTGGTTCAATTGCTTACAGCAACATCAACAAGGATAAGAGAGAAAACAGTTACTGTTATATGCTCGCTTGCCGAATCGGGTAGCTGCGAGGATTGGTTAGTTTCTGAAGGTGTTCTTCCAGCTCTTATAAGACTTGTTGAATCAGGAAGTGCTGTAGGTAAAGAAAAGGCTGCGATATCGCTTCAGAGGTTATCAATGTCAGCTGAAACATCGCGTGAAATAGTCGGACATGGTGGCGTGTGTCCGCTTGTTGAGCTTTGTCAAACCGGCGATTCCGTTTCGCAGGCTGCAGCAGCTTGTTCATTGAAGAATATTTCAGCTGTTCCTGAGGTGAGACAGGTTTTGGCTGAACAAGGGATTGTTAGGGTTATGATCAATCTGTTAACTTGTGGAATGTTGTTAGGTTCCAAAGAATATGCAGCAGAATGTTTGCAGAATCTCACTGCAAGCAATGAGAGTCTAAAAAGAAGTGTTGTATCCGAAGGCGGTGTTAGGAGTCTTTTAGCTTATCTTGATGGTCCACTTCCTCAAGAATCCGCGGTCGCGGCGTTAAGGAATTTGGTTGGATCGGTTTCTGAGACAACTTTGGTTTCATTAGGATTACTTCCTCGTTTGGTTCATGTTTTGAAATCCGGATCATCAGGAGCACAACAAGCAGCTGCATCAGCAATCTGCCGAGTTTGCAGCTCAACTGAGATGAAGAAATTGGTTGGCGAAGCCGGTTGCATTCCCCTCCTTGTTAAGATGCTTGAGGCTAAACCAAGTAGTGCTAGAGAAATTTCTGCACAAGCATTAGCAAGCTTGATGACTGTGTCTTATAATAGAAGAGAAGTTAAGAAAGATGATAAAAGTGTGCCGAATTTGGTTCAGTTGCTTGATCCTAGTCCTCAAAACAATGCAAAAAAATATGCAGTTACTTGCCTTGGATTGATTTCTTCAAGTAAGAAATGTAAGAAGCTAATGATCTCATATGGTGCTATTGGATATTTGAAGAAACTTACTGAGATGGATATTCCAGGAGCTCAAAAGTTACATGAGAGATTGGAAAGAGGGAAATTGAGAAGTTTGTTTGGCAAGAAATAG 1686 0.417 MVEDAVAVDASCSTEDWLLHAKELVPIALDKAREVKGFPTRWKMIISRLEQIPSMLSNLSSHPCFSKNALCKEQLQAVSNSLRDAIESAELCLKEKYEGKLQMQSDLDALIGKMDLNLRDCGLLIKTGMLGEATLPLTVASVSGSVEQSDSAAHNNIRELLARLQIGHLEAKHKALDSVVEVMKEDEKNVLAVMSRSNIAALVQLLTATSTRIREKTVTVICSLAESGSCEDWLVSEGVLPALIRLVESGSAVGKEKAAISLQRLSMSAETSREIVGHGGVCPLVELCQTGDSVSQAAAACSLKNISAVPEVRQVLAEQGIVRVMINLLTCGMLLGSKEYAAECLQNLTASNESLKRSVVSEGGVRSLLAYLDGPLPQESAVAALRNLVGSVSETTLVSLGLLPRLVHVLKSGSSGAQQAAASAICRVCSSTEMKKLVGEAGCIPLLVKMLEAKPSSAREISAQALASLMTVSYNRREVKKDDKSVPNLVQLLDPSPQNNAKKYAVTCLGLISSSKKCKKLMISYGAIGYLKKLTEMDIPGAQKLHERLERGKLRSLFGKK* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1684 561 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 4 561 - -
Tpr6g1684 561 SUPERFAMILY ARM repeat 157 540 IPR016024 -
Tpr6g1684 561 Gene3D - 375 455 IPR011989 -
Tpr6g1684 561 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
Tpr6g1684 561 SMART arm_5 186 226 IPR000225 GO:0005515
Tpr6g1684 561 SMART arm_5 391 430 IPR000225 GO:0005515
Tpr6g1684 561 SMART arm_5 431 471 IPR000225 GO:0005515
Tpr6g1684 561 SMART arm_5 351 390 IPR000225 GO:0005515
Tpr6g1684 561 SMART arm_5 309 350 IPR000225 GO:0005515
Tpr6g1684 561 SMART arm_5 268 308 IPR000225 GO:0005515
Tpr6g1684 561 SMART arm_5 472 514 IPR000225 GO:0005515
Tpr6g1684 561 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 4 561 - -
Tpr6g1684 561 Gene3D - 456 545 IPR011989 -
Tpr6g1684 561 Gene3D - 146 373 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1684 Tpr-Chr6 18108779 18112526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1684 378 536 U-box Gene Family AT2G23140 31.481 1.76e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1684 - - gmx:100789140 900.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1684 6 18108779 18112526 Tpr6g1684 6 18108779 18112526 ECH