Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1676 ATGGCGAACCCAGAAGCAAAGCTCGATACTTTCTTGCAATGGCTACAGGCAAATGGGGTGGAGCTACGAGGTTGCAATATCAAGTACTGTGATTCCATAAAAGGGTTTGGCATCTTCTCTGATAAAGATGTTTCTGATGCTGGGATTTTGTTGGTTGTTCCACTAGAGTTAGCAATTACTCCAATGAGGGTGTTGCAAGATCCTTTTCTAGGACCAGAATGTAGAGCATTGTTTGAAGAAGGAGATGTAGATGACAGGCTCTTAATGATGTTGCTATTGACGGTGGAGCGTTTGCGTAAGGGTTCTCTATGGAAGCCGTACCTTGATATGCTTCCAACCACTTTTGGAAATACACTTTGGTTTAGTGAAGAGGAACTTCAAGAGCTAAGAGGAACAACATTATACCGTGCAACTGAGTTACAGAAGAAAAGCCTGTTGAATTTGTATGAAACTAAAGTGAAGGATTTAGTGAAGAAACTTTTGAATGATGGAAATTCGGAGATTGAGGTGTGCTTTGAAGATTTTCTTTGGGCAAATTCAGTATTTTGGAGCCGCGCTTTGAACATTCCATTGCCACGTTCTTATGTATTTCCTGAGATGCAAAATGTTCATCAGAGTTGCACTCAAGAAGCTGATGAAAAAGGAAACCAGGTTATAAAATCTGACGATCTAACTAAGGAAACAACACATAGCACAGTGCAAGGAGACACTGTTTGGGTTGAGGGTCTTGTTCCTGGCATTGATTTTTGCAACCATGATCTGAAGCCAATAGCAACATGGGAAGTTGATGGAACGGGCATAACAACAGGAGTTCCTGTCTCTATGTATCTTCTTTCGGCTACACAAAGTCCCTCACAGATTGTTCAAGAAATTTCCATTAGTTATGGCAACAAAGGAAATGAGGAACTTCTATATCTGTATGGTTTCGTCATTGATGGTAACAAAGATGACTACCTCATGGTCCATTATCCTACAGAAGCGATAAATACTATTTCTTTTTCAGAGTCTAAAGGCCAGCTTCTTGAAGTGCAGAATGCTGAAATGAGATGTCTTTTACCCAAAACTCTCCTGGATAATGGATTTTTTCCATTAGGCACCGAAAACAGTGGAGAAAATAAAAAGAGCAACAATGCTTGCAACTATAGTTGGAGTGGTCAGCGCAAGTTTCCATCTTATGTAAACAAGCTTGTTTTTCCTGAAAAATTTATGGCTACCTTGAGGACCATAGCCATGCAAGAGGATGAGCTTTTCAAGGTTTCGTCAATGCTAGAAGAGCTTGTTGGACCTGAAGGGGAGAGGCAATTATCAGATACAGATGTCCAATCAGCAATATGGGAGGTTTGTGGTGATTCTGGAGCTTTACAAGTGCTAGTTGATCTTCTTCATGTCAAGTTAATGGATCTTGAAGAGCATTCTGGAACTGAGGAAAGTGACTCTGAATTGCTCAAGAAGGCCCTTATAATTGATAGCCAGGAAGATAGTAAACAAATGGCAAATGAGTCGGCAGAAACAAAGTTGATGACTAGAAACAAATGGTCTGCTATAGTATATAGACGAGGTCAAAAACAGCTAACTCGATTATTCTTGAAAGAAGCAGAACATGCTCTGCAGTTATCGATGAACGAAGAGATCAGTGTTCCTTAA 1644 0.4027 MANPEAKLDTFLQWLQANGVELRGCNIKYCDSIKGFGIFSDKDVSDAGILLVVPLELAITPMRVLQDPFLGPECRALFEEGDVDDRLLMMLLLTVERLRKGSLWKPYLDMLPTTFGNTLWFSEEELQELRGTTLYRATELQKKSLLNLYETKVKDLVKKLLNDGNSEIEVCFEDFLWANSVFWSRALNIPLPRSYVFPEMQNVHQSCTQEADEKGNQVIKSDDLTKETTHSTVQGDTVWVEGLVPGIDFCNHDLKPIATWEVDGTGITTGVPVSMYLLSATQSPSQIVQEISISYGNKGNEELLYLYGFVIDGNKDDYLMVHYPTEAINTISFSESKGQLLEVQNAEMRCLLPKTLLDNGFFPLGTENSGENKKSNNACNYSWSGQRKFPSYVNKLVFPEKFMATLRTIAMQEDELFKVSSMLEELVGPEGERQLSDTDVQSAIWEVCGDSGALQVLVDLLHVKLMDLEEHSGTEESDSELLKKALIIDSQEDSKQMANESAETKLMTRNKWSAIVYRRGQKQLTRLFLKEAEHALQLSMNEEISVP* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1676 547 SUPERFAMILY SET domain 7 314 IPR046341 -
Tpr6g1676 547 Pfam SET domain 35 295 IPR001214 GO:0005515
Tpr6g1676 547 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 4 543 - -
Tpr6g1676 547 PANTHER SET DOMAIN-CONTAINING PROTEIN 4 543 - -
Tpr6g1676 547 Gene3D set domain protein methyltransferase, domain 1 5 310 - -
Tpr6g1676 547 Gene3D - 371 543 IPR036464 -
Tpr6g1676 547 CDD SET_LSMT 31 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1676 Tpr-Chr6 18038524 18045483 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr6g1676 SET 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1676 - - gmx:100777394 880.167