Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1671 ATGTCATTCACAGGAACTCTTGATAAATGCAAAGCTTGTGATAAGACTGTTTATGTTGTTGACTTGTTAACTCTTGAAAATATACCTTACCATAAAAATTGCTTCAAATGTAGTCACTGCAAGGGATATCTTACGATGAGCACCTACTCCTCAATGGATGGTGTCCTCTATTGTAAGCCACATTTTGAGCAGCTTTTCAAAGAATCCGGCAATTTCAGCAAGAACTTTCAAACAGCAAAGTCTTCTGAGAAACAAAATGAGGCGAACAGAGCCCCCAACAGACTATCCTCTATGTTCAGTGGAACTCTAGACAAATGTTCAGTCTGCACAAAAACAGTCTATCCTTTGGAAAAGATGACACTGGAAGGGGAATGTTACCACAAGAATTGCTTTAGGTGTGCTCATGCAGGTTGCCACCTTACACATTCTTCATATGCTGCCCTAGATGGTGTCCTTTATTGCAAGCACCATTTTCAACAACTTTTCATGGAGAAAGGAAACTACAATCATGTACTTCAAGCTGCTGCAAATAAAAAGAATGCAACTCCACCTCCTGAACCATCTGAACCAGTTGAATCAGATGAACCAGCTGAATCAGCTGATGCTGCTGATGTTGATGATGAACCATCAAAGCCAGATGAAGAAACAGAGGAACAGACAGAAGAAAAGTCTGAGACACAGGAAGATTGA 690 0.4043 MSFTGTLDKCKACDKTVYVVDLLTLENIPYHKNCFKCSHCKGYLTMSTYSSMDGVLYCKPHFEQLFKESGNFSKNFQTAKSSEKQNEANRAPNRLSSMFSGTLDKCSVCTKTVYPLEKMTLEGECYHKNCFRCAHAGCHLTHSSYAALDGVLYCKHHFQQLFMEKGNYNHVLQAAANKKNATPPPEPSEPVESDEPAESADAADVDDEPSKPDEETEEQTEEKSETQED* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1671 229 Pfam LIM domain 106 161 IPR001781 -
Tpr6g1671 229 Pfam LIM domain 10 65 IPR001781 -
Tpr6g1671 229 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Tpr6g1671 229 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Tpr6g1671 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Tpr6g1671 229 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 202 - -
Tpr6g1671 229 SMART lim_4 9 61 IPR001781 -
Tpr6g1671 229 SMART lim_4 105 157 IPR001781 -
Tpr6g1671 229 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Tpr6g1671 229 MobiDBLite consensus disorder prediction 177 229 - -
Tpr6g1671 229 Gene3D Cysteine Rich Protein 102 170 - -
Tpr6g1671 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Tpr6g1671 229 MobiDBLite consensus disorder prediction 191 229 - -
Tpr6g1671 229 Gene3D Cysteine Rich Protein 5 101 - -
Tpr6g1671 229 PANTHER OS06G0237300 PROTEIN 1 202 IPR045268 GO:0051015
Tpr6g1671 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Tpr6g1671 229 CDD LIM1_SF3 6 68 - -
Tpr6g1671 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1671 Tpr-Chr6 17998970 18001890 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Tpr6g1671 LIM 1.4e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1671 - K09377 gmx:100779513 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1671 6 17998970 18001890 Tpr6g1671 6 17998970 18001890 ECH