Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1669 ATGGGAAGGACACCATGTTGTGACAAGAAGGGTTTGAAGAAAGGACCTTGGACTACTGAAGAGGATGAAATTCTTGCTAACTATATCAACAAAAATGGTGGTCATGGAAGCTGGCGTTCTCTCCCCAAGATCACAGGTCTTCTTCGTTGTGGTAAGAGTTGCAGGCTTAGGTGGACCAACTATCTCAGACCTGACATTAAACGTGGTCCCTTTACTTCTGAGGAAGAAAAACTAGTCATACAGCTTCATGCCATCCTTGGAAATAGGTGGGCTGCAATTGCATCTCAGTTACCAGGAAGAACGGACAATGAGATAAAGAACTTCTGGAACACGCATTTGAAGAAACGTCTGAAAAGCATGGGGATTAATCCAGAAACACATGAGCCAGTAGCTTCATCAAGTTACCCCAATCACAAGTCACATGCCTCGATTTCGACACGTCACATGGCTCAATGGGAGAGTGCAAGGCTTGAAGCAGAAGCAAGACTCTCAATTGAGTCATCATCACACTTCAACAACAACAACAATCCTAATTCCATTACAAAAACTGATTCTTCTTCTTCTGATTACTTTCTCCGTATATGGAACTCTGAAGTTGGAGATGCATTTCGCAATGTTAACAAAATTACTAGTTGTTGTCAGAGTCCTATTTCTGCAGGATCATTATCTACCAACAAATGTGACTCTGTTATAGCAGAGTTAGCCTCTAATAATCCAATAAGCAATAGTGTGAAAGAAGAGTTTGAGTGGAAAAACTATAAGTTTTGTGCTGAAGATTTGATTCTTGGATATGATTCATCAAGCTCTAATGACATGGATGATTCATCAGACACTGCTTTGCAGCTCTTGTTGGATTTTCCTATGAACAATGACATGAACTTCTTGGAAAACTCTTTTGCTTTTTCCCTTTAA 912 0.4024 MGRTPCCDKKGLKKGPWTTEEDEILANYINKNGGHGSWRSLPKITGLLRCGKSCRLRWTNYLRPDIKRGPFTSEEEKLVIQLHAILGNRWAAIASQLPGRTDNEIKNFWNTHLKKRLKSMGINPETHEPVASSSYPNHKSHASISTRHMAQWESARLEAEARLSIESSSHFNNNNNPNSITKTDSSSSDYFLRIWNSEVGDAFRNVNKITSCCQSPISAGSLSTNKCDSVIAELASNNPISNSVKEEFEWKNYKFCAEDLILGYDSSSSNDMDDSSDTALQLLLDFPMNNDMNFLENSFAFSL* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1669 303 PANTHER PROTEIN ODORANT1-LIKE 1 298 - -
Tpr6g1669 303 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Tpr6g1669 303 CDD SANT 16 62 IPR001005 -
Tpr6g1669 303 Gene3D - 11 68 - -
Tpr6g1669 303 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tpr6g1669 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 298 - -
Tpr6g1669 303 Gene3D - 70 145 - -
Tpr6g1669 303 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Tpr6g1669 303 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Tpr6g1669 303 CDD SANT 70 113 IPR001005 -
Tpr6g1669 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Tpr6g1669 303 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Tpr6g1669 303 SMART sant 67 115 IPR001005 -
Tpr6g1669 303 SMART sant 13 64 IPR001005 -
Tpr6g1669 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1669 Tpr-Chr6 17990731 17993008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1669 1 296 MYB Transcription Factor Family AT3G61250 59.136 2.45e-116 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr6g1669 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1669 K09422 - gmx:100800408 429.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1669 6 17990731 17993008 Tpr6g1669 6 17990731 17993008 ECH