Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1666 ATGGATCACGGGGACCATATGGCGTTACCCGGTTCTGCATCTTACTATATGCAGCAGAGAGGACTAGCTGGTTCTGGAGCACAACCTGAGTTACATGTTTCGCCGAGTTTTAATCAATTGTCTAATCCCAATCTACCATTTCAATCCAGCATTGGTGGTGGTAGTAACATTGGATCAACATTACCTTTAGAATCTTTACCAATTTCATCTCAAGGTGTCAATGTGAGTGGTCCTACCGGGGTACCATCTGGGGAGACTGTGAAAAGGAAGAGAGGAAGGCCGAGGAAATATGGCTCTGATAGAGTTGTGTCGTTGGCACTGAGTCCAAGTCCAGCACAATCTAGTAATCCCGGAACCGTGATGCAAGGAGGCCCGAAACGAGGGAGAGGGCGTCCACCTGGGAGTGGGAAGAAACAACAATTGGCTTCTTTTGGTGAGTCGATGCCTGGTTCAGCTGGGGTTGGATTCACTCCACATATCGTCCATGTTGCAATTGGTGAAGACATTTCAGCAAAAGTCATAGCATTGTCTCAGGTGCGCGCTAGGGCTTTATGTGTCCTTTCCGGTTTTGGCAGTGTCTCCGCTGTCACACTTGGTCAGCCTTCTAGTTCAGGTGGCACTGTCCAATATGAGGGACATTTTGAAATCCTGAGCTTGTCAGGTTCTTTGTTGCCAACTGAGAATGGCAGCATACGGGACCGAGCTGGTGGGATAAGTGTTATGCTTTCTAGTCCTGAAGGCCGCGTATTTGGTGGAAGAGTTGCTGGGCAGCTAATTGCTTCAGCTCCTACCAAGGTGGTGGTTGGGACCTTTCTATGGGGTAGATTAAATGGAAGGAACAAGAAAAAGGAAAGTTCAGAAGATGCTGAAGGTGCTGTGGAATCAGTTCATCAAGGAGCTCATAATCCGGGTGCACTGAATAGCATTTCACCAAACCAAAATCTGACCCCAACCTCATCTTTAAGTCCTTGGTCAGCAGCATCGCGTCCGATGGATATGCGTAATTCTCACGGTGACATTGATTTAATGCGTGGTTGA 1038 0.4778 MDHGDHMALPGSASYYMQQRGLAGSGAQPELHVSPSFNQLSNPNLPFQSSIGGGSNIGSTLPLESLPISSQGVNVSGPTGVPSGETVKRKRGRPRKYGSDRVVSLALSPSPAQSSNPGTVMQGGPKRGRGRPPGSGKKQQLASFGESMPGSAGVGFTPHIVHVAIGEDISAKVIALSQVRARALCVLSGFGSVSAVTLGQPSSSGGTVQYEGHFEILSLSGSLLPTENGSIRDRAGGISVMLSSPEGRVFGGRVAGQLIASAPTKVVVGTFLWGRLNGRNKKKESSEDAEGAVESVHQGAHNPGALNSISPNQNLTPTSSLSPWSAASRPMDMRNSHGDIDLMRG* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1666 345 CDD DUF296 157 271 IPR005175 -
Tpr6g1666 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 318 - -
Tpr6g1666 345 MobiDBLite consensus disorder prediction 106 121 - -
Tpr6g1666 345 MobiDBLite consensus disorder prediction 306 345 - -
Tpr6g1666 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 318 IPR039605 GO:0003680
Tpr6g1666 345 Pfam Plants and Prokaryotes Conserved (PCC) domain 158 271 IPR005175 -
Tpr6g1666 345 Gene3D - 158 288 - -
Tpr6g1666 345 SUPERFAMILY AF0104/ALDC/Ptd012-like 156 273 - -
Tpr6g1666 345 MobiDBLite consensus disorder prediction 306 326 - -
Tpr6g1666 345 ProSiteProfiles PPC domain profile profile. 152 294 IPR005175 -
Tpr6g1666 345 MobiDBLite consensus disorder prediction 70 145 - -
Tpr6g1666 345 PRINTS AT-hook-like domain signature 88 98 IPR017956 GO:0003677
Tpr6g1666 345 PRINTS AT-hook-like domain signature 124 135 IPR017956 GO:0003677
Tpr6g1666 345 SMART AT_hook_2 88 100 IPR017956 GO:0003677
Tpr6g1666 345 SMART AT_hook_2 126 138 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1666 Tpr-Chr6 17966203 17973711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1666 1 345 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 44.875 1.00e-76 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1666 - - cam:101500720 449.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1666 6 17966203 17973711 Tpr6g1666 6 17966203 17973711 ECH