Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1635 ATGGAAGAAACAGAGGAGAGGGAGGGAAATGCAGAACAAGAAGAAGAAGAAGAATGCGACGCTGTTGCAGTGGTGGCGGATATCCAACATGTCATCGAATCGGTGGTTCAAGTCGGCGAATATCGAAGAACACAGAGAAAAGAATCACACGTTCTTGCTCGTCGTTTCAAACACATTTTACCTCTTATGGAAGACCTTCGTGATCTTCAAAATCCTGTTCCTCAAAACGGTGTCGTTTGGTTGAGAAACCTAAGGGATGCGCTTTTGTTGGCAAAAGAATTGTTGAAATTGTGCAGCCAAGGAAGCAAAATTCACCTGGCATTGGAGGGAGAGGCGGTTATGATCAAATTTCAGAAGGTTTATGAAAAATTAAGCCAAGCTTTTGATGGTGTGCCTTGTGATGAATTGGGGATTTCTGATGAAGTAAAGGAACAGCTTGAGCTAATGCACGTGCAACTCAGGAGGGCAAGGAGAAGAACTGATACACAAGACATAGAACTAGCAATGGATATGATGGTGGTGTTCTCCGATGACCATGACCGTAATGCTGATAGTGCTATTGTCGAAAGGCTTGCAATAAAGTTGGAGCTTCGCAGTTTTGAGGATCTTGAGGTAGAAACAGTGGCTGTTGGAAACCTTGTTAGAGAAAGAAAAGGACAACAAGCTGAGAGTACACAGAAAATAATTGGCCTTCTTAACAGATTCAAAAGGGTTGCAGGTATGGAAGAAACCGCTATCGTCCTTGATGGTGATCCTGCCATGCCTAATAAGATGCTTGGAAGAAGCACTTCTTTGGTCATCCCTCATGAGTTTCTATGTCCAATTACACTTGAAATCATGACTGATCCTGTTATTGTTGCAAGTGGACAGACATATGAAAGGGAAAGCATAGAGAAGTGGTTCAAATCCAATCATAAAACCTGTCCAAAGACAAGGCAACCTCTAGAACATCTTCAATTAGCACCAAACTGTGCCTTAAAAAACTTAATTGTTGAATGGTGTGAGAACAACAACTTCAAACTTCCAAAAATCTACACTTCATCATGTCAAGAAGGCTCTTCAACTGAAAACCAAGAAGAAATTCCATCTTTGGTTGAAAGCCTAGGGTCTATCAACTTAGAACATCAGAGAAAGGCAGTCGAAAGAATCCGCATGTTATCAAAAGAAAATCCAGAGAACAGAGTTTTAGTCGCCGAGCATGGAGGAATACCACCATTAGTACAACTACTATCCTATCCAGATTCAAAAATAAAAGAACATGCTGTTACCGCACTTTTGAATCTATCAATTGATGAAGATAACAAGAAACTTATATCACAAGAAGGTGCTATTCCAGCTATTATAGAAGTGTTGGAGAATGGAAGTATTGTAGCTAAAGAAAACTCAGCAGCAGCTTTATTTAGCTTATCAATGATTGATGAAAATAAAGAGATTGTAGGAATATCAAATGGGATTCAACCTTTGGTAAACTTGTTACAAAATGGAACAGTTAGAGGGAAAAAAGATGCTGCTACAGCACTTTTTAGCTTATCATTAAACAATGCAAATAAAGATAGAGCTATAAGAGCTGGAATTGTTACACCTTTACTTGAACTGTTACAGGACACAAACTTGGGAATGATTGATGAAGCACTCTCAATTTTGTTGTTACTTGTGTTGAATCCTGAAGGGAGACAAGAGATTGGACACTTATCTTTCATTGAAATTCTTGTTGGCTTTATTAGAGAAGGGACTCCTAAGAATAAGGAATGTGCAGCTTCTGTTCTTCTTGAGTTGTGTTCAAGTAATTCTTCTTTCACTTTGGCAGCACTTCAGTTTGGAGTTTATGACCATTTAATTCAGATGAAGCAAACTGGTACAAATAGAGCACAGAGGAAAGCAAATGCAATTTTAGATCTCATTAGCAAGAGTGAGCAAATTTAA 1923 0.39 MEETEEREGNAEQEEEEECDAVAVVADIQHVIESVVQVGEYRRTQRKESHVLARRFKHILPLMEDLRDLQNPVPQNGVVWLRNLRDALLLAKELLKLCSQGSKIHLALEGEAVMIKFQKVYEKLSQAFDGVPCDELGISDEVKEQLELMHVQLRRARRRTDTQDIELAMDMMVVFSDDHDRNADSAIVERLAIKLELRSFEDLEVETVAVGNLVRERKGQQAESTQKIIGLLNRFKRVAGMEETAIVLDGDPAMPNKMLGRSTSLVIPHEFLCPITLEIMTDPVIVASGQTYERESIEKWFKSNHKTCPKTRQPLEHLQLAPNCALKNLIVEWCENNNFKLPKIYTSSCQEGSSTENQEEIPSLVESLGSINLEHQRKAVERIRMLSKENPENRVLVAEHGGIPPLVQLLSYPDSKIKEHAVTALLNLSIDEDNKKLISQEGAIPAIIEVLENGSIVAKENSAAALFSLSMIDENKEIVGISNGIQPLVNLLQNGTVRGKKDAATALFSLSLNNANKDRAIRAGIVTPLLELLQDTNLGMIDEALSILLLLVLNPEGRQEIGHLSFIEILVGFIREGTPKNKECAASVLLELCSSNSSFTLAALQFGVYDHLIQMKQTGTNRAQRKANAILDLISKSEQI* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1635 640 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 341 IPR013083 -
Tpr6g1635 640 Gene3D - 360 476 IPR011989 -
Tpr6g1635 640 SUPERFAMILY RING/U-box 266 343 - -
Tpr6g1635 640 Gene3D - 477 639 IPR011989 -
Tpr6g1635 640 SMART arm_5 472 512 IPR000225 GO:0005515
Tpr6g1635 640 SMART arm_5 390 430 IPR000225 GO:0005515
Tpr6g1635 640 SMART arm_5 431 471 IPR000225 GO:0005515
Tpr6g1635 640 SMART arm_5 513 553 IPR000225 GO:0005515
Tpr6g1635 640 SMART arm_5 554 594 IPR000225 GO:0005515
Tpr6g1635 640 CDD RING-Ubox_PUB 271 313 IPR045210 -
Tpr6g1635 640 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 18 638 - -
Tpr6g1635 640 Pfam Armadillo/beta-catenin-like repeat 473 511 IPR000225 GO:0005515
Tpr6g1635 640 Pfam Armadillo/beta-catenin-like repeat 390 429 IPR000225 GO:0005515
Tpr6g1635 640 ProSiteProfiles U-box domain profile. 266 340 IPR003613 GO:0004842|GO:0016567
Tpr6g1635 640 Coils Coil 139 159 - -
Tpr6g1635 640 SMART Ubox_2 270 333 IPR003613 GO:0004842|GO:0016567
Tpr6g1635 640 Gene3D - 19 132 IPR036537 GO:0007166
Tpr6g1635 640 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 483 525 IPR000225 GO:0005515
Tpr6g1635 640 SUPERFAMILY ARM repeat 360 634 IPR016024 -
Tpr6g1635 640 Pfam U-box domain 267 337 IPR003613 GO:0004842|GO:0016567
Tpr6g1635 640 PANTHER U BOX DOMAIN-CONTAINING 18 638 - -
Tpr6g1635 640 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 401 443 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1635 Tpr-Chr6 17631105 17634092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1635 1 640 U-box Gene Family AT5G42340 59.098 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1635 - - cam:101489704 1035.79