Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1622 ATGGAGCTAGCTTTGAGCTTAGGAGACACACCAAAACCATTTTCTTTGTTTGAAAATCCCAACAAAGGTTTCTCCACAGTACTTGAACAAGCTCAAAAATCCTTAGATGAAAAAAGAGGTTCATCAGATCCACCAATTCAGCTCAACCTTCTTCCTTCAACACCGGTTCATCCTTCTCCTCATCAAATTCCTTGGCTCAACCATGCACTGGGTGTGGAAACTGCGAGCGTGACAAATGCTAACCGATTCCGGTTGGCGTCCGTGGAAGATACTACGGACGAGGGAGCTGCAGTTTCATCCCCAAATAGCGCAGCGTCATCTTTTCGAATGGATTTCTCTATCATGAATGGTAATTGTGATGCTAGAAACAATAGCCATGAGGGGGGTGTCGATAGCGATGATGATGAAAATGGATCCACTAGGAAGAAACTCAGATTATCTAAAGAGCAATCGGCTTTTCTTGAAGAAACTTTCAAAGAACACACCACTCTCAATCCTAAACAAAAACTTGCTCTTGCAAAACAATTAAATCTTCGTCCACGTCAAGTAGAAGTTTGGTTTCAGAATAGAAGAGCAAGGACAAAATTAAAGCAAACAGAGGTGGATTGTGAGTACTTAAAAAAATGTTGTGAAACTCTAACAGAAGAAAATAGAAGGTTACAAAAGGAGCTTCAAGAATTAAGAGCTTTGAAAACTTCTCAACCATTTTACATGCAACTTCCAGCTACTACACTCACTATGTGTCCCTCTTGTGAGAGGGTTGCCACCAACACCACCGGAGCAGCCGCCACCAAAAATACCGCCTCGATCATCGCCGACGGGCGCCACCAAAATTAA 837 0.4253 MELALSLGDTPKPFSLFENPNKGFSTVLEQAQKSLDEKRGSSDPPIQLNLLPSTPVHPSPHQIPWLNHALGVETASVTNANRFRLASVEDTTDEGAAVSSPNSAASSFRMDFSIMNGNCDARNNSHEGGVDSDDDENGSTRKKLRLSKEQSAFLEETFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNTTGAAATKNTASIIADGRHQN* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1622 278 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 28 274 - -
Tpr6g1622 278 Pfam Homeodomain 141 195 IPR001356 GO:0003677
Tpr6g1622 278 SMART halz 197 240 IPR003106 GO:0006355|GO:0043565
Tpr6g1622 278 PANTHER - 28 274 - -
Tpr6g1622 278 Coils Coil 203 233 - -
Tpr6g1622 278 SMART HOX_1 139 201 IPR001356 GO:0003677
Tpr6g1622 278 SUPERFAMILY Homeodomain-like 128 198 IPR009057 -
Tpr6g1622 278 ProSitePatterns 'Homeobox' domain signature. 172 195 IPR017970 GO:0000981|GO:0006355
Tpr6g1622 278 ProSiteProfiles 'Homeobox' domain profile. 137 197 IPR001356 GO:0003677
Tpr6g1622 278 Pfam Homeobox associated leucine zipper 197 231 IPR003106 GO:0006355|GO:0043565
Tpr6g1622 278 CDD homeodomain 141 198 IPR001356 GO:0003677
Tpr6g1622 278 Gene3D - 145 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1622 Tpr-Chr6 17380602 17382508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1622 57 253 Homeobox Transcription Factor Family AT3G60390 56.087 5.28e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tpr6g1622 Homeodomain 2.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1622 K09338 - gmx:100810885 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1622 6 17380602 17382508 Tpr6g1622 6 17380602 17382508 ECH
Tpr6g1622 6 17380602 17382508 Tpr1g4509 1 53288400 53291105 PCT