Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1621 ATGGGGGAAGAAAATTCTGATGCAATGAACCTTGATTTGAATCTGGGTCCTGACCCGGAACCACAAACTGGGTCAATAGCAGCTAATGAAGCTTTGAATTTGGATGATTGGATTGACGAGCCTCTTCAGCGAATTAGCCAAGCTGCTGCTAGGCTTAGGGGGAGACAGAGGTGGAGATGGAGGCAGCTTCCCACGTATCCTCAAACAGTTCATCGCATTTTACCTCAATCCTCTTATGCTCAAGTTCATCAAATTTTACCTGAACCTGCACGTCATATTTATATCCCACCCGAAGCTCGCAATATCTCTATCGAATTGAACAATTTTTTGGTCAATTCGGGGAATGGAACTGGATTACAGGCTGGGGAAGGAAGTGTGGCTGCTGTGGAGAGAATGGTGGAGGAAGAGGAGGTGCCTGCACCGAAAGCGTGTGAGAACAATAATGGTGTTACGGTCGATGAGACTTCGCAGAAGAAGGATGATGTTGAAAAGGCTGGTGGCGGTGATGGGGATTTTTTCGATTGTAATATCTGTTTGGACTTGGCCAAGGAACCTGTTTTGACTTGCTGTGGTCATTTGTTTTGTTGGCAATGCTTATATCGATGGTTGCATCTGCATTCAGATGCTAAGGAGTGTCCAGTTTGCAAGGGAGAGGTGACAATTAAGAGTGTTACACCTATATATGGCCGTGGGAATAATGCTCGTGTTCTTGAGGAGGATTCTGCTCTTAAAATCCCTCCTAGGCCACAAGCTAAGCGTGTTGAGAGTTTGAGACAAACCATTCAGAGAAATGCATTTGCTGCACTCCCTGTGGAAGAGATGATTCGACGTCTTGGAAGCAGAATTGATCTCACTAGGGATTTATTTCAGCCAAATGAACCAGAAAATGCTCGTGGATCAGCAGAGAGAACTACTTCTTTGCTAAGTAGGTTTTTGACATCTCGAGGCATGCGTAGAGAGCAGAATCCTGTGCCACCCTCAGATGATGTTACTGACTTGAATCAGAACAATGTTAATAATGGTGCTGAGTTGGGAGGCAGGGTGCAATCCCTTTTGCTTAGAAGGTCACAATCACATAGAGCAACACTTTCTACTCTTTCATCAGCACTTACTTCTGCTGAAAGGTTGGTTGAAGCATATTTCCGTAGCAATCCATTAGGCAGAAACCAAGAACAACCACCTTCTTCAGTCGATGACAGAGATTCCTTTTCAAGCATTGCTGCTGTAATAAATTCAGAGAGTCAAGTCGACACTGCTGTAGAAATTGATTCCATGGTAACCTCTTCTAGGAGAAGAACTGACGCTTCAAGATTGTCTGATGTGGACAGTGGAGATTCTCGTGCTCCAAGGCGCAGGCGTCTGAATTGA 1368 0.4488 MGEENSDAMNLDLNLGPDPEPQTGSIAANEALNLDDWIDEPLQRISQAAARLRGRQRWRWRQLPTYPQTVHRILPQSSYAQVHQILPEPARHIYIPPEARNISIELNNFLVNSGNGTGLQAGEGSVAAVERMVEEEEVPAPKACENNNGVTVDETSQKKDDVEKAGGGDGDFFDCNICLDLAKEPVLTCCGHLFCWQCLYRWLHLHSDAKECPVCKGEVTIKSVTPIYGRGNNARVLEEDSALKIPPRPQAKRVESLRQTIQRNAFAALPVEEMIRRLGSRIDLTRDLFQPNEPENARGSAERTTSLLSRFLTSRGMRREQNPVPPSDDVTDLNQNNVNNGAELGGRVQSLLLRRSQSHRATLSTLSSALTSAERLVEAYFRSNPLGRNQEQPPSSVDDRDSFSSIAAVINSESQVDTAVEIDSMVTSSRRRTDASRLSDVDSGDSRAPRRRRLN* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1621 455 Pfam Zinc finger, C3HC4 type (RING finger) 175 215 - -
Tpr6g1621 455 PANTHER OS01G0830200 PROTEIN 12 433 - -
Tpr6g1621 455 SUPERFAMILY RING/U-box 171 228 - -
Tpr6g1621 455 SMART ring_2 175 215 IPR001841 -
Tpr6g1621 455 ProSitePatterns Zinc finger RING-type signature. 190 199 IPR017907 -
Tpr6g1621 455 MobiDBLite consensus disorder prediction 424 455 - -
Tpr6g1621 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 242 IPR013083 -
Tpr6g1621 455 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 12 433 IPR045103 GO:0005783|GO:0006511|GO:0061630
Tpr6g1621 455 ProSiteProfiles Zinc finger RING-type profile. 175 216 IPR001841 -
Tpr6g1621 455 MobiDBLite consensus disorder prediction 1 22 - -
Tpr6g1621 455 CDD RING-HC_AtRMA_like 173 217 - -
Tpr6g1621 455 MobiDBLite consensus disorder prediction 427 455 - -
Tpr6g1621 455 MobiDBLite consensus disorder prediction 137 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1621 Tpr-Chr6 17362920 17365268 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1621 1 446 C3H Transcription Factor Family AT3G58030 52.778 6.95e-130 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1621 K10666 - gmx:100811099 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1621 6 17362920 17365268 Tpr6g1621 6 17362920 17365268 ECH