Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1614 ATGGCAGAATCTGAAGATATTCAACCTTTGGTTTGCGATAACGGAACCGGCATGGTCAAGGCTGGTTTTGCAGGAGATGATGCACCAAGGGCAGTGTTTCCTAGCATAGTAGGGCGTCCACGACATACAGGGGTAATGGTTGGAATGGGACAAAAAGATGCATATGTAGGTGATGAAGCACAATCGAAGAGAGGTATATTGACATTGAAATATCCAATTGAGCATGGAATTGTTAGTAATTGGGATGATATGGAGAAGATCTGGCATCATACTTTCTACAATGAACTTCGTGTTGCTCCCGAAGAACATCCTGTTCTTCTTACTGAAGCACCTCTTAATCCTAAGGCTAATCGTGAGAAAATGACCCAGATCATGTTTGAGACATTCAATACTCCTGCTATGTATGTTGCTATTCAAGCTGTGCTTTCTCTTTATGCTAGTGGCCGTACAACTGGTATTGTTCTCGATTCTGGGGATGGTGTTAGTCACACGGTTCCCATCTATGAGGGTTATGCACTTCCACACGCAATCCTTCGTTTGGATCTTGCAGGCCGCGATCTAACCGATGCGTTGATGAAGATTTTAACCGAGCGTGGTTACACTTTCACTACTTCGGCAGAGCGTGAAATTGTGAGGGATGTGAAGGAGAAATTGGCTTATATTGCTATTGATTATGAGCAGGAGTTGGAAACTGCTAAGACTAGCTCAGCTGTGGAGAAGACCTACGAGTTACCTGATGGGCAGGTGATCACGATCGGTGCTGAAAGGTTCCGATGCCCTGAAGTTTTGTTCCAGCCATCCATGATAGGGATGGAATCTCCTGGTATCCATGAGACAACATTTAACTCGATCATGAAGTGTGACGTCGACATTAGGAAGGATCTCTATGGTAACATTGTTTTGAGTGGTGGTTCGACAATGTTCCCTGGTATTGCTGATAGAATGAGTAAGGAGATTACAGCATTGGCACCTAGTAGCATGAAAATCAAGGTTGTAGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGTTCCATTTTGGCATCCCTCAGCACTTTCCAACAGGTAAAATGTGGATTTCAAAGGCAGAATATGATGAATCCGGGCCATCAATTGTACACAGGAAATGCTTCTAAGTTCAAATCATGGAGCAGAAGAGCTGGATCAAGGAAATTACATATACTTTGTACTACAGAAATACCGTCTAGTTGGTTGAGGAAACTTCCATTTCCTATTCTTTTATCTTTTATCACGTTTCTTTGTGTTTTCGTTTCTTGGTATGTTGGGATATAA 1296 0.4298 MAESEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYTFTTSAEREIVRDVKEKLAYIAIDYEQELETAKTSSAVEKTYELPDGQVITIGAERFRCPEVLFQPSMIGMESPGIHETTFNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVKCGFQRQNMMNPGHQLYTGNASKFKSWSRRAGSRKLHILCTTEIPSSWLRKLPFPILLSFITFLCVFVSWYVGI* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1614 431 SUPERFAMILY Actin-like ATPase domain 149 357 IPR043129 -
Tpr6g1614 431 PRINTS Actin signature 28 37 IPR004000 -
Tpr6g1614 431 PRINTS Actin signature 51 62 IPR004000 -
Tpr6g1614 431 PRINTS Actin signature 63 85 IPR004000 -
Tpr6g1614 431 PRINTS Actin signature 117 130 IPR004000 -
Tpr6g1614 431 PRINTS Actin signature 142 161 IPR004000 -
Tpr6g1614 431 PRINTS Actin signature 238 254 IPR004000 -
Tpr6g1614 431 Gene3D - 10 357 - -
Tpr6g1614 431 PANTHER ACTIN-4 1 363 - -
Tpr6g1614 431 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Tpr6g1614 431 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Tpr6g1614 431 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Tpr6g1614 431 Gene3D - 140 340 - -
Tpr6g1614 431 PANTHER ACTIN 1 363 IPR004000 -
Tpr6g1614 431 Pfam Actin 5 357 IPR004000 -
Tpr6g1614 431 Gene3D Actin; Chain A, domain 4 182 273 - -
Tpr6g1614 431 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Tpr6g1614 431 SMART actin_3 7 369 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1614 Tpr-Chr6 17297527 17300235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1614 1 357 Cytoskeleton Gene Families AT5G09810 95.518 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1614 K10355 - gmx:100807341 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1614 6 17297527 17300235 Tpr6g1614 6 17297527 17300235 ECH
Tpr6g1614 6 17297527 17300235 Tpr1g4522 1 53565214 53570198 PCT