Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1613 ATGGCTTCGTTTCTAAATAATATTTTCGGGTCCCCTGACAAAAAGTATAACATCAAATTAGATAAAACGTTTAATAAGGACCCTCTGGCATGGTCGAGGGCACTGGTTAGGCATCACTGTGGCAAATTCTCCATAGCTGCGGTTCAGGCGAATATGGATATGGAAGATCAGAGCCTTGTTGAAGTTGGCACTAATGCACTCTTTGTTGGAGTTTATGACGGACATAAAGGCAAAGCCACTGCGATCTATATTAGAGAACATATCTTAGGGGAAATATTGAGGTGTATTCAGCAGAATATTAACTCTATGAATAAATACTTCTTTAAGTTAGCGATGGAGACTATTCTGAGGCAAGGTGTTGCCGAAATGGAAAGAGGGTTTATTGGGTTTGCTAGAAATAGTTTAGAGCAACAGAATCAGCTACAGAATAGTTTTCAGCAACAGCATGAGATACAGCATGAGATACAAAATAATTTTGAGCAACAGCATGAGATACAAAATAGTTTTGTTAGTTCAGGTTGTTTGATTTGTATCATATGGAGAGGGACGTTATTTGTCGCCAACGTTGGAGACTCGCGCGCTATACTCGGTTCTCATAAGGGCATTGGTCCATTGAAAAGATTGGTTGTTAAACAGATGGTTAGAGATCACAATTTTCTAAATTCATCTATTCAGCAAGAACTCGCTGAGTTGCATACAGATCATTATAATCGTAGTCTCTACGAAAGTATTGAAGATAAAGGCTTAATCGAGACAAGTAGATGTATAGGAAATGCATATATGAAAACTGAAAAGTTCACCCAAAGGAGACCATCCGCAATCCCAATGTCGGAAGCAGTGACTCCAACTTATTATACATTTCCTTTGATATCATCACAGCCAGAAGTTTGTTCAAGAGTCTTAAAAAACACTGATAGATTCATTATATTTGGATCTGGTGGATTTTGGAAATTGATTTCAAATGAGGATGCTGCTAAAGTTGTTAACACCAGTCCACGGGATAGAATCGCTGAAAGACTTGTCACGCTTGCTCTAGAGAAGGGGGCTGCTAAAGGGGGGAAAACATATCGTGATCTTATAAAGATTCCTAAGAGTAATTGTGTTAGTGGGAACAATGGCAATCAAAATAATGGATTTAGATCGGCTTATCATGATGATATAACTGTGATTGTTGTATATTTGGACAAAAGGCCAAATAGGGAGGGTGTGAGGCCAGGGTTTTCAAATTTCTATAATCAGAGTTCGACAATCAGAGCTCGACAATCAGAGTTTACAAATTTCTATAATAATGCTAATGCGTGA 1302 0.3825 MASFLNNIFGSPDKKYNIKLDKTFNKDPLAWSRALVRHHCGKFSIAAVQANMDMEDQSLVEVGTNALFVGVYDGHKGKATAIYIREHILGEILRCIQQNINSMNKYFFKLAMETILRQGVAEMERGFIGFARNSLEQQNQLQNSFQQQHEIQHEIQNNFEQQHEIQNSFVSSGCLICIIWRGTLFVANVGDSRAILGSHKGIGPLKRLVVKQMVRDHNFLNSSIQQELAELHTDHYNRSLYESIEDKGLIETSRCIGNAYMKTEKFTQRRPSAIPMSEAVTPTYYTFPLISSQPEVCSRVLKNTDRFIIFGSGGFWKLISNEDAAKVVNTSPRDRIAERLVTLALEKGAAKGGKTYRDLIKIPKSNCVSGNNGNQNNGFRSAYHDDITVIVVYLDKRPNREGVRPGFSNFYNQSSTIRARQSEFTNFYNNANA* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1613 433 SUPERFAMILY PP2C-like 32 396 IPR036457 -
Tpr6g1613 433 ProSiteProfiles PPM-type phosphatase domain profile. 39 394 IPR001932 -
Tpr6g1613 433 Pfam Protein phosphatase 2C 68 350 IPR001932 -
Tpr6g1613 433 PANTHER ALPHABET, ISOFORM E-RELATED 20 397 - -
Tpr6g1613 433 Gene3D - 18 401 IPR036457 -
Tpr6g1613 433 CDD PP2Cc 54 394 IPR001932 -
Tpr6g1613 433 SMART PP2C_4 36 392 IPR001932 -
Tpr6g1613 433 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 20 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1613 Tpr-Chr6 17292922 17294962 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1613 29 395 PP2C-type Phosphatase Gene Family AT5G06750 34.383 4.94e-64 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1613 K01102 - gmx:100806476 226.098