Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1607 ATGGGAAGAATCGAGAGACTTCAATCTTCCTACCAATCCCTGGATGAATCGTTCGAAATTGGGAAAGAGATGTATCGTGGACAACAATACAGTCAAATTTACTTCGCTCGTCTTCATTTGATGCGTACTCTTTTGTATTCTCTTGTTCCTCTTTGGAAACCTAATTCTCCTGTTTGCACGGTGTTGGGATTGGAAGAGGGAAAAGAGTGTGTCATTGTTGGAACATTGTTTAAACACATGAAATTGAAACCTTGCATACTTGATGAGTATTCTAAAGAGAGATCGGTGGTTCCACTTGTCAAGCCGCATAACTTTGTGAACCAAGATGATTATCTCGATTTGGAAGATGAAAGTGGAAGAGTTAAGCTTGGTGGGAATATTATTGTACCATCTGTTTATGTAACAGGAATTGTGGTTGCTATATATGGTAAGGAAACGGGAGCAGGTGATTTTTTGGTTCATGAAGTTCTAGAAGCTGGCTTACCACCGCAGATAGAATTCCCTATTAAATCAAGGGAAGACAGATATGTTGTTCTTGTGTCAGGAATAAGTGTTGGGAGCAGCAGGTCTAACCCTCTGCAGTTTCAGCTTCTCGTTGATCATATTACTGGTCATTTAGGAGATGAGAAGGAGCAAAGTATTGCATCACAAATTGTTCGTGTAGTCATTGCTGGAAATTCTGTTGAGATGCCTCGTGGACTTCTTAATGGACAGAATTTGGCTTCAAAAGATCTCTCGAGGATGGCAGAACCAGTAAAGGAGCTAGATATTCTGTTGAATCAGATTGCTGCTGCTTTGCCATTGGATATCATGCCAGGACCCTGTGACCCTGCTAATTTTGCATTACCACAGCAGGCGTTGCATAGATGCCTTTTCCCTGGGTCATCAGTGTACAACACTTTTAGATCTTGTACAAATCCTCATTGTTTTGAGCTTGATGGTATCAGGTTTCTTGGGACATCTGGTCAGAATGTAGATGATCTTGACAAATATTCAGAGGCAAAAGATAAGCTTGACTTCATGGAAAGGACATTACGATGGAGGCATTTGGCACCAACTGCACCTAATACCCTTGGGTGCTATCCTTACACTGATAGGGATCCTTTCTTCATTGAGAGTTGTCCCCATGTGTACTTTGTTGGCAATCAGGATAAATATGATACTCGTGTGATAAAGGGATCAGAAGGGCAATCGGTGAGACTTGTATGTGTTCCTAAATTCAGCGAAACTGGAGTTGCAGTTATGTTGAATCTGAGGGATCTCGAATGCCATGCTCTCAGTTTTGGAACTCAGTTCAGCCCATAA 1305 0.4153 MGRIERLQSSYQSLDESFEIGKEMYRGQQYSQIYFARLHLMRTLLYSLVPLWKPNSPVCTVLGLEEGKECVIVGTLFKHMKLKPCILDEYSKERSVVPLVKPHNFVNQDDYLDLEDESGRVKLGGNIIVPSVYVTGIVVAIYGKETGAGDFLVHEVLEAGLPPQIEFPIKSREDRYVVLVSGISVGSSRSNPLQFQLLVDHITGHLGDEKEQSIASQIVRVVIAGNSVEMPRGLLNGQNLASKDLSRMAEPVKELDILLNQIAAALPLDIMPGPCDPANFALPQQALHRCLFPGSSVYNTFRSCTNPHCFELDGIRFLGTSGQNVDDLDKYSEAKDKLDFMERTLRWRHLAPTAPNTLGCYPYTDRDPFFIESCPHVYFVGNQDKYDTRVIKGSEGQSVRLVCVPKFSETGVAVMLNLRDLECHALSFGTQFSP* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1607 434 Pfam DNA polymerase alpha/epsilon subunit B 177 386 IPR007185 GO:0003677|GO:0006260
Tpr6g1607 434 Gene3D - 168 433 - -
Tpr6g1607 434 CDD MPP_PolD2_C 176 428 IPR041863 -
Tpr6g1607 434 Pfam DNA polymerase delta subunit OB-fold domain 29 156 IPR040663 -
Tpr6g1607 434 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 5 428 IPR024826 -
Tpr6g1607 434 Gene3D - 36 159 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1607 5 433 Core DNA Replication Machinery Family AT2G42120 77.389 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1607 K02328 - gmx:100780072 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1607 6 17255886 17261515 Tpr6g1607 6 17255886 17261515 ECH