Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1597 ATGAGAGAAGTTTGGAATATAGGAAGATGCAATCAACAACTATCAATAGTTGAAGAAGGAGAAGGAGAATCAACAAAATCTTCAAATACAAACACAATTATGAGCCGTTTTGAGTCACCAGCTTCTGCTTTTTATGCAACAGAAAATTGCATGGGATTTGCAGAATTTGATAACCAAGTTGATAATAGTAATAATAATCCAAGTTTGAGTTCTCAATTATATAAGCTTAATGATTTGGAGTTCCCTTTGTATCAATCTCTAAGGGAAAATAATCATTTCTTGGAATCATCAAACCAACTTGATCCTAACTTGGAATTTTCAAACACTTTGCAAGCATTGGTGAAATCTCAATTGAATGGTAATCAATGTCTTAGATCGCCAGAAAACTCGAATAAATTTTCGTGTGAGGATTTTCCCGGGATTAAGTCCTTTCCAATTGAACAACAAAAGTTGTTTTTTGATGGTCTTGCCTCAGCTAGCAACAGCTCATCATTTTGTAACAAAGGAAATCATGACTATATGGTTGCTCGAGGACCTTATCATTTATCGGTTGAACAATTGAATTTCGCTTCTCATCATGATCAGAAGTTGTGTCCAACAATTTCAGCTGGAAGTTCATCAACTTCTCATGGAAATACTACTTCTAATGGGAATGTAGTCTCGAGTAAAACACGAATTAGATGGACAAAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTCGGAGGTGCTGAGAAGGCAACACCAAAGGCTATATTAAAGATGATGGATTCTGATGTTTTGACCATATTCCATGTGAAAAGTCATTTACAAAAATATAGAACTGCAAAATTCATGCCAGAGTCAGTTCAAGGTAAATCTGACAAAAGAATCCATACAGAGGATCTACATCATGTTGGTGTTAAAACTGGATTTCAAATCAAGGAAGCACTTCAACTTCAATTAGATGCACAAAGGCGTCTTCATGAACAACTCGAGATTCAACGAATGTTACAATTGCGACTTGAGGAACAAGGCAGACAGCTGAAAGAAATGTTTGATAAGCAGCAGAAGACATCTAATAACCTCTTTAATACTCCAAATACAGTTAATGATGATAGTACAAAAATTAGTCACAAAGATGCTGAGGTTTCTATTTCTGAAGGGGCTGAAAATTCTTTAATCCCTTGTAAAATCTCTTTGGATACATAA 1197 0.3542 MREVWNIGRCNQQLSIVEEGEGESTKSSNTNTIMSRFESPASAFYATENCMGFAEFDNQVDNSNNNPSLSSQLYKLNDLEFPLYQSLRENNHFLESSNQLDPNLEFSNTLQALVKSQLNGNQCLRSPENSNKFSCEDFPGIKSFPIEQQKLFFDGLASASNSSSFCNKGNHDYMVARGPYHLSVEQLNFASHHDQKLCPTISAGSSSTSHGNTTSNGNVVSSKTRIRWTKDLHEKFVECVNRLGGAEKATPKAILKMMDSDVLTIFHVKSHLQKYRTAKFMPESVQGKSDKRIHTEDLHHVGVKTGFQIKEALQLQLDAQRRLHEQLEIQRMLQLRLEEQGRQLKEMFDKQQKTSNNLFNTPNTVNDDSTKISHKDAEVSISEGAENSLIPCKISLDT* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1597 398 Gene3D - 222 281 - -
Tpr6g1597 398 SUPERFAMILY Homeodomain-like 221 277 IPR009057 -
Tpr6g1597 398 Pfam MYB-CC type transfactor, LHEQLE motif 308 354 IPR025756 -
Tpr6g1597 398 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 25 395 - -
Tpr6g1597 398 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 223 278 IPR006447 GO:0003677
Tpr6g1597 398 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 25 395 IPR044848 GO:0003700
Tpr6g1597 398 Pfam Myb-like DNA-binding domain 227 276 IPR001005 -
Tpr6g1597 398 Coils Coil 310 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1597 Tpr-Chr6 17165076 17168039 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1597 213 351 G2-like Transcription Factor Family AT4G28610 56.738 1.62e-47 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tpr6g1597 Myb_DNA-binding 3.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1597 - - cam:101504038 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1597 6 17165076 17168039 Tpr6g1597 6 17165076 17168039 ECH