Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1589 ATGAAGGATATGAATAAGAAAAGAAAAATAGATGAGGCAGGAAGCAGTAACTTGACTTCCAAGGAAGAAGAACTTAGACTTCTCATTGAACCTCTTGCCAAACCTGTACTCGTTAATCTTCTCTCTAAACTAGGTTCCAAAGACCCTTCAATTGCAGCAGAGATAGAAACTATTGCATATGGTGATCATGTCCATAGAAAGCTTTTTGTTCGTGACTTGTCCTTGAATACCACTTCACAATCTTTGTGTAATGCATTTAAAGAGTATGGACAAATTGAGCATGCGAAGGTGATTGTTAATGAAGGCACTAAGAAATCACGTGGATATGGATATATTCTTTACAAAGATGTGAAATCGGCTAAGAAAGCATTGCATGTACCTAGCAAGTTAATCGATGGAAGATTGACTCTATGTATGTTAGCTAGTGATGAGGTCACAAGAAAAATTAGTGATACTACTCTGAGAAAGCTTTTTATTGAAAACTTATCACCACAAGTAACAAATGGCATGCTGCACAACTATTTTAAGGGGCATGGTGATATTGAGGAATGTTCAGTTGTATATCACAAGGATTCGAAACTATCACGTGAATATGGCTTCGTTACATACAAGACAGTAGAGGCTGCAAAGAATGCCATAAAAGACCTAAATAAAAGCAATCTTGAGGGAAGACGTATAAATGTAGAATATGCTTATCCCAACAAGGGTGGAGGTGGTCAGTCATCTGTTCCTCCAATGGCAGCCTTACCTGTGCCACCAGGATATACATATCCCCAAACTGCTGCACTATATGCTGCACCTCCTTATACATACCCTCAAACGGCTGCACCTCCTTATTCATACCCTCAAACGGCTGCACCTCCTTATTCATACCCTCAAACGGCTGCACCTTCTAATCCATACCCTCAAACGGCTGCAACTCCTAATCCATACCCTCAAACGGCTGCACCATATGTTGCACCTCCTTATCCATACCCTCAAATGCCTGCACCATATGCTGCATCTCATTATAATAGTGCTCCCCCTGGACCTTCTACTTATCAAACACATGGTTATGGACAGGGTCCTTATCCTCAGCAATACTATCAAAACCAATGA 1098 0.4062 MKDMNKKRKIDEAGSSNLTSKEEELRLLIEPLAKPVLVNLLSKLGSKDPSIAAEIETIAYGDHVHRKLFVRDLSLNTTSQSLCNAFKEYGQIEHAKVIVNEGTKKSRGYGYILYKDVKSAKKALHVPSKLIDGRLTLCMLASDEVTRKISDTTLRKLFIENLSPQVTNGMLHNYFKGHGDIEECSVVYHKDSKLSREYGFVTYKTVEAAKNAIKDLNKSNLEGRRINVEYAYPNKGGGGQSSVPPMAALPVPPGYTYPQTAALYAAPPYTYPQTAAPPYSYPQTAAPPYSYPQTAAPSNPYPQTAATPNPYPQTAAPYVAPPYPYPQMPAPYAASHYNSAPPGPSTYQTHGYGQGPYPQQYYQNQ* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1589 365 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 13 325 - -
Tpr6g1589 365 Gene3D - 146 245 IPR012677 -
Tpr6g1589 365 SUPERFAMILY RNA-binding domain, RBD 149 239 IPR035979 GO:0003676
Tpr6g1589 365 MobiDBLite consensus disorder prediction 336 365 - -
Tpr6g1589 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 233 IPR000504 GO:0003723
Tpr6g1589 365 Gene3D - 59 145 IPR012677 -
Tpr6g1589 365 MobiDBLite consensus disorder prediction 339 365 - -
Tpr6g1589 365 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 13 325 - -
Tpr6g1589 365 SUPERFAMILY RNA-binding domain, RBD 66 148 IPR035979 GO:0003676
Tpr6g1589 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 134 IPR000504 GO:0003723
Tpr6g1589 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 226 IPR000504 GO:0003723
Tpr6g1589 365 SMART rrm1_1 67 139 IPR000504 GO:0003723
Tpr6g1589 365 SMART rrm1_1 156 229 IPR000504 GO:0003723
Tpr6g1589 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 152 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1589 Tpr-Chr6 17129196 17131295 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1589 151 214 C2H2 Transcription Factor Family AT2G19380 39.062 6.37e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1589 K12741 - gmx:100776344 272.707