Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1588 ATGGCAGGAACTGCTATCTACACCTCCTGCAACTTAGGGAGATGTAGGTTGGTATTAAAAACTCACAATGGAAGGAGCATGCAAGGGAAGCTAGCATCTCAATGTCAAATGAGAAGGAACTTTACAGTAAAAGCAGAAGTGAGGTTTGTAACAGCTGATGATGCTAAGGAACTTGTAGCAGTAGATGGATATAATGTTCTTGATGTGAGGGACATATCTCAGTTTGAACGAGCACACATTAAAACATGTTATCATGTCCCTCTTTTTGTTGAAAATACTGACAATGATCCTGGTACATTCTTATTAAGGACTGTACACAATAATTTTTCTGGATTGTTCTTTGGGATACCATTCACTAGGCCAAATCCTGATTTTGTACAATCTGTCAAGAGTCAATTACAGCCTGAAACTAAACTTTTGATTGTATGTCAGGAAGGATTAAGGTCGGCTGCAGCAGCAAATAAGTTAGAAGAAGCTGGTTTCCAAAATGTAGCATGCTTAACATCTGGACTTCAAACTGTGAAACCAGGAACATTTGAATCTGTTGGCAACACAGAGTTGCAGAATGCTGGCAAAGCTGGTTTGGTGCAAATTCAAGGAAAAATTTCAGCTGTTTTAGGAACCGTTCTTATTTGTGCATATTTATTCATTACATTCTTTCCTGATCAAGCTGAGAAGCTGTTCCAACTGGTCCCTGCAGGCTAA 705 0.3915 MAGTAIYTSCNLGRCRLVLKTHNGRSMQGKLASQCQMRRNFTVKAEVRFVTADDAKELVAVDGYNVLDVRDISQFERAHIKTCYHVPLFVENTDNDPGTFLLRTVHNNFSGLFFGIPFTRPNPDFVQSVKSQLQPETKLLIVCQEGLRSAAAANKLEEAGFQNVACLTSGLQTVKPGTFESVGNTELQNAGKAGLVQIQGKISAVLGTVLICAYLFITFFPDQAEKLFQLVPAG* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1588 234 ProSiteProfiles Rhodanese domain profile. 60 183 IPR001763 -
Tpr6g1588 234 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 9, CHLOROPLASTIC 7 233 IPR044615 -
Tpr6g1588 234 Gene3D - 33 181 IPR036873 -
Tpr6g1588 234 Pfam Rhodanese-like domain 51 172 IPR001763 -
Tpr6g1588 234 CDD RHOD 54 175 - -
Tpr6g1588 234 SMART rhod_4 50 180 IPR001763 -
Tpr6g1588 234 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 44 172 IPR036873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1588 Tpr-Chr6 17126321 17128540 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1588 4 228 Sulfurtransferasese or Rhodanese AT2G42220 64.889 1.27e-110 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1588 - - gmx:100500055 358.992