Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1585 ATGGACTCAGGCAACTCTTCTTCAGAAGAGTCTTCTCTAAATGGCTTAAAATTTGGCCAAAGAATCTATTTTGAAGACACGGCTCTTGCAAATGCTTCTTCTTCTTCTTCTGGTTCAACAAGTTCAAAGAAAGTAAGAAGTGTGTCAGTTCAACATTCTCAACCTCCTATGTGTCAAGTTCAAGGATGTAAGCTAGATCTGACTGATGCTAAAGCTTATTATTCTAGACATAAAGTTTGTTCCATGCATTCTAAATCTCCTACTGTCACTGTTTCTGGTCTTCAACAAAGGTTTTGTCAACAGTGTAGCAGATTTCATCAGCTTGCTGAATTTGATCAAGGAAAAAGAAGTTGCCGCAGACGACTAGCTGGTCATAACGAGCGTCGTAGAAAGCCTCCACCCAACTCTCTCTTAACCTCACGTTTTGCCAGACTTTCTTCATCTGTTTTTGATAACAGCGGCAGAGGTGGCAGCTTCCTGATGGAATTTGATTCACACCAAAAACTTAGTCTGAAAAATGCACTTCCATCACATGGAAATCAAACCACAACACTCGGTTGGCCTTGGCCGGATAACTCGGAGTCGCCATCTGACAACCTTTTCTTGCAAGGTTCAGTGGGCGGGACAAGCTTTGCTGGTGTGAGGCATCCTCCCGAGGAAAATTACACTGGAGTCACAGATTCAAGCTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCCTCAGCAACAAGTCACGAATTGAATAACATGCTGAGTTTCAATAATGGGACACCTATGACACAACTTGCTACATCATCTCCTGGTTTAGCCATGCATCAACTTCCGAACAGTTCATGCTGTTTCAAGGACATTGATCATGGTAACCTTTCACATGAGGCTGTCCCTGATCTTGTTTCAGGTCATATTTCGCAGCCTCTCGATAGCCAACTTCGCGGTGAGCTTGATGTAGAACACTCCAGGGCCTATGAATCTTCGCAATGGTCACTGTAA 996 0.4347 MDSGNSSSEESSLNGLKFGQRIYFEDTALANASSSSSGSTSSKKVRSVSVQHSQPPMCQVQGCKLDLTDAKAYYSRHKVCSMHSKSPTVTVSGLQQRFCQQCSRFHQLAEFDQGKRSCRRRLAGHNERRRKPPPNSLLTSRFARLSSSVFDNSGRGGSFLMEFDSHQKLSLKNALPSHGNQTTTLGWPWPDNSESPSDNLFLQGSVGGTSFAGVRHPPEENYTGVTDSSCALSLLSNQTWGSSATSHELNNMLSFNNGTPMTQLATSSPGLAMHQLPNSSCCFKDIDHGNLSHEAVPDLVSGHISQPLDSQLRGELDVEHSRAYESSQWSL* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1585 331 SUPERFAMILY SBT domain 56 137 IPR036893 GO:0003677|GO:0005634
Tpr6g1585 331 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 2 321 IPR044817 GO:0003677
Tpr6g1585 331 Pfam SBP domain 58 131 IPR004333 GO:0003677
Tpr6g1585 331 Gene3D - 48 119 IPR036893 GO:0003677|GO:0005634
Tpr6g1585 331 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 2 321 - -
Tpr6g1585 331 ProSiteProfiles Zinc finger SBP-type profile. 55 132 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1585 Tpr-Chr6 17109117 17112173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1585 16 331 SBP-box Gene Family AT2G42200 40.483 1.70e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tpr6g1585 SBP 2.2e-32 No_clan