Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1582 ATGATCGATTTTAGAAAACTCAGATTAACATTCACAGTTTTCAATTTCACCCAAAATCGCACCATTCTTAAACCCTCACTAAACCCTAGATTTTTTAGCACACAAAATTCCCTTCAATTAGATGTAAAACCTAAACTTCGCTCAAAATCAGCGATCAAAGAAGCTCAATCTGCATTGCTTGAATATCTTCATTCCACGAGAAGCTTGCAATTCTTAGACGCAGATAACATGTGCAAAAACTCACCTTTTTTCCTTCAAAATCTCGTCGAAAAATCCCTAAAAAACGAGAATACGATTAACACAAAAAGGTTAATTTCTCGTTACTTACGTTACCATCCCATTAACGAATTTGAACCCTTTTTCGAGAGTTTGGGTTTGAAGCCTTCTGAATATGCACCATTGCTTCCTCGGGGTTTGATTTTTCTCAATGATGATCCTCTTTTGATGGAGAATTATCATACTTTGTGTAACTATGGGGTTCCTCGATCCAAAATGGGGAAAATTTTCAAATTAGCGCCTCAGGTTTTAAGCTTTGAAAATGGGGTTTTGAATTTGAAGCTTAAGGCTTATGAAAATTTGGGTATTTCACCTTCCATTTTAGTGAATGCTGTTGCTGTGAGTCCATGTCTTTTGGTTGGTGATGTTAATTTTGAATTTGTTAAGGTTGTGGAGATTTTGAAGAGTATTGTTGCTAAGGGTGGTGATGGTGATGTTGATAGTGGTTTGATTCAGTGGCATTTTTTGGATGAGGCTTCTTGTAAGTGGGGTTTAATGCTCGAGCTCTTGTGCTGGCTTTCTGATGCTGGTTTCAGTGAGGAACAGTTGGCTGAGATTATTCGTCGTAGTCCTTGTGTTGTTTTCGAGGAATCAGGAGGTAAGACACTCTCTATGATTGGCTTTTTGACCAAATTTGGATTGTCTGTGAACCAGATTGTGCCTGTGTTTCTGGAGTTTCCGCAGATTCGGATGGTCAAGTTTTTTGCTAACTTGAGGATGTGTTTTCAGCTTTTGACTGAAATTGAGATGGAAGCTGCAGAGATTGGAAAGATTTTCCAGTCTCACACATTATTTGTGGGTTCCTCCACTCTCAAGACTACAAAGAGTTTGCTTGGCTGCTTGAATGTTGGCAAGAAACGTCTCTGTAGCATTGTGCAGGATGATCCTTTTGTAATGAAGAATTGGGTTCTGGGAAAGAGAGTTAAGCCTTTGGTTAGCATAAGGGAGGCAGAAGAGGAGAAATCGAAGGCGGGGAAGACAGAGTTCTTGTTGCGCTTAGGATATGTGGAAAATACGAAACAAATGAATTCGGCATTTAAGATATACAGAGGTAAGGGAGCTGAGCTTCAAGAAAGATTTGATTTTATTGTTAAAGCTGGCTTGACACGCGACGAAGTTTGTAGAATGATTAGAGTTTCCCCTCAGATTCTCAATCAGAACACAGATACGGTCAAGACGAAGATTGAGTACCTTGAAAAACAAGGATATTCTGTATCAGATTTAGGTCCGCGGCCGCGATTTGGGTTGTGA 1527 0.3949 MIDFRKLRLTFTVFNFTQNRTILKPSLNPRFFSTQNSLQLDVKPKLRSKSAIKEAQSALLEYLHSTRSLQFLDADNMCKNSPFFLQNLVEKSLKNENTINTKRLISRYLRYHPINEFEPFFESLGLKPSEYAPLLPRGLIFLNDDPLLMENYHTLCNYGVPRSKMGKIFKLAPQVLSFENGVLNLKLKAYENLGISPSILVNAVAVSPCLLVGDVNFEFVKVVEILKSIVAKGGDGDVDSGLIQWHFLDEASCKWGLMLELLCWLSDAGFSEEQLAEIIRRSPCVVFEESGGKTLSMIGFLTKFGLSVNQIVPVFLEFPQIRMVKFFANLRMCFQLLTEIEMEAAEIGKIFQSHTLFVGSSTLKTTKSLLGCLNVGKKRLCSIVQDDPFVMKNWVLGKRVKPLVSIREAEEEKSKAGKTEFLLRLGYVENTKQMNSAFKIYRGKGAELQERFDFIVKAGLTRDEVCRMIRVSPQILNQNTDTVKTKIEYLEKQGYSVSDLGPRPRFGL* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1582 508 PANTHER MITOCHODRIAL TRANSCRIPTION TERMINATION FACTOR-RELATED 48 506 - -
Tpr6g1582 508 Pfam mTERF 264 495 IPR003690 GO:0003690|GO:0006355
Tpr6g1582 508 SMART mt_12 276 307 IPR003690 GO:0003690|GO:0006355
Tpr6g1582 508 SMART mt_12 166 196 IPR003690 GO:0003690|GO:0006355
Tpr6g1582 508 SMART mt_12 466 496 IPR003690 GO:0003690|GO:0006355
Tpr6g1582 508 SMART mt_12 201 232 IPR003690 GO:0003690|GO:0006355
Tpr6g1582 508 PANTHER CGI-12 PROTEIN-RELATED 48 506 IPR003690 GO:0003690|GO:0006355
Tpr6g1582 508 Gene3D Transcription termination factor 3, mitochondrial 293 506 IPR038538 -
Tpr6g1582 508 Gene3D Transcription termination factor 3, mitochondrial 77 230 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1582 Tpr-Chr6 17076654 17079502 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr6g1582 mTERF 1.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1582 - - lja:Lj1g3v4317450.1 605.905