Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1581 ATGAAAGAAAAGAAGGATTTGAAGAAGAGAAAAATAGATGAGACAAGAAACAACAGTGAAGGAGAACTTAGACTTCTCATGGAACCTCTTGCCAAACCTGTACTCATTGATCTTCTCTATAAACTAGGTTCCAATGACCCTTCAATTGCAGCAATGATAGAAACTATTGCATATGCTGATCATGTCCATAGAAAGCTTTTTGTTCATGACTTGTCCTTGAATACCACTTCACAATCTTTGTGTAATGCATTTAAAGTGTATGGAGAAATTGAGGATGGGAATGTGATTGTTTATGAAAACACTCAAAAATCACGAGGATTTGGATATATCCTTTACAAAGATGTGAAATCGGCTCAGAAAGCATTGAGTGTACCTAGCAAGTTAATCGATGGAAGACAGACTCTGTGTATGTTAGCTCGTGATGAGGGCAAAAGCAAAACTAGTGATACTTCACTGAGAAGGCTTTATATTGGAAACTTATCACCAGAAGTAACAGATGGAATGCTGCACGACTATGTTGGAAGCCTTGGTGATATTGAGGAATGTAACATTGTATATCAAAAGGATTCATATGTATCACGTGGATATGGCTTCGTTACATACAAGACAGTAGAGGCTGCAAAGGAAGCTATAGCTGACCTACATCGCAGTACATTTAAGGGAAGAAATATAATTGTGAACTATGCTACTAATCCCTACAAGGGTGGAGGTGGTCAGTCGTCTGTTCCTCCAACGGCAGCCTTACCTGTGCCTGCACCATATTATAATAGTGTCCCCCCTGGACCTTCTACTTCTACTTATCAAACACATGGTTATGGACAGGGTCCTTATCCTCGGCATTACAACCAAAACCAATGA 858 0.3939 MKEKKDLKKRKIDETRNNSEGELRLLMEPLAKPVLIDLLYKLGSNDPSIAAMIETIAYADHVHRKLFVHDLSLNTTSQSLCNAFKVYGEIEDGNVIVYENTQKSRGFGYILYKDVKSAQKALSVPSKLIDGRQTLCMLARDEGKSKTSDTSLRRLYIGNLSPEVTDGMLHDYVGSLGDIEECNIVYQKDSYVSRGYGFVTYKTVEAAKEAIADLHRSTFKGRNIIVNYATNPYKGGGGQSSVPPTAALPVPAPYYNSVPPGPSTSTYQTHGYGQGPYPRHYNQNQ* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1581 285 Gene3D - 56 144 IPR012677 -
Tpr6g1581 285 SMART rrm1_1 154 227 IPR000504 GO:0003723
Tpr6g1581 285 SMART rrm1_1 65 137 IPR000504 GO:0003723
Tpr6g1581 285 MobiDBLite consensus disorder prediction 259 285 - -
Tpr6g1581 285 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 12 263 - -
Tpr6g1581 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 141 IPR000504 GO:0003723
Tpr6g1581 285 Gene3D - 145 277 IPR012677 -
Tpr6g1581 285 SMART rrm2_1 65 137 IPR003954 GO:0003676
Tpr6g1581 285 SMART rrm2_1 154 227 IPR003954 GO:0003676
Tpr6g1581 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 231 IPR000504 GO:0003723
Tpr6g1581 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 133 IPR000504 GO:0003723
Tpr6g1581 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 224 IPR000504 GO:0003723
Tpr6g1581 285 SUPERFAMILY RNA-binding domain, RBD 148 241 IPR035979 GO:0003676
Tpr6g1581 285 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 12 263 - -
Tpr6g1581 285 SUPERFAMILY RNA-binding domain, RBD 64 145 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1581 Tpr-Chr6 17062535 17064614 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1581 144 261 C2H2 Transcription Factor Family AT2G19380 30.833 1.27e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1581 K12741 - mnt:21401008 243.817