Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1580 ATGAGTAAGAAGAAAGAAATGGAGGATTTGGAAAACAACAATGGTGACTTTGTTTCCAATGAAGAAATTAGAATTTTCATTGAATCTCTTACCAAACCTCAACTCGTTGATCTTCTCTCTCAACTAGGGTCCAAATATCCTTCAATTGCACAAGAAATAGAAAGTTTTGCAAATGTTGATCGTGCTCGTCGAAACCTTAATGCATTTCAAGTGCATGGAAAATCGACTCAGAGTGCACCAAGAAAATCGACTCAGAGTGCATCGAGTGCACCAAACAAGTTTGTTCGTGGAGTATGTATGTTAGATGATGAGACCAGAAGAATCAGAAGTGCTCCTGATCTTTCCGAGAGAAATCTTTTTATTGAAAACTTATCAGCACAAGTAACAAGGGAAATGCTGCTCGACTATTTTGAGAGGCATGGTGATATAGAGGAATGTTTACTTGTATGTCAACGTCGCGCGGGTTCAAAGGTATCAAGTTATTCTGGCATCGTTACATACAAGACAGCAGAGGCAGCAAAGAAAGCGATAGATGACCTAGATCAAACGACTCTTGGGGGAAGAACTATAACTGTAAAATATTATGATACATTATATGGAGGTGGTCAGCCGTCTGTTCCTGCAAGAATAGCTCCAATGGAAGCCTTACATATGTCTCCAGAATATGTTGAGGGTTACACATACCCCCGACCTGGTGCACCATATGCCGCACCACGTTATCCATACCCCCAAACAGGTGCACCATTTGCTGCGTCTCCTTATCCATACCCCCGAACTGATCCACCATATGCCGTGTCTCCTTATCCATACCCCCGAACTGATGCACCACATGGTGCACCACCTTATCCATACCCGCGAACTGCTGCAAGATTTGCTTTACCTCCTTATCCATACCCCCAAACCGATGCACCATCATATGCCGCGTCTCGTTATCCATGA 939 0.4324 MSKKKEMEDLENNNGDFVSNEEIRIFIESLTKPQLVDLLSQLGSKYPSIAQEIESFANVDRARRNLNAFQVHGKSTQSAPRKSTQSASSAPNKFVRGVCMLDDETRRIRSAPDLSERNLFIENLSAQVTREMLLDYFERHGDIEECLLVCQRRAGSKVSSYSGIVTYKTAEAAKKAIDDLDQTTLGGRTITVKYYDTLYGGGQPSVPARIAPMEALHMSPEYVEGYTYPRPGAPYAAPRYPYPQTGAPFAASPYPYPRTDPPYAVSPYPYPRTDAPHGAPPYPYPRTAARFALPPYPYPQTDAPSYAASRYP* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1580 312 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 191 IPR000504 GO:0003723
Tpr6g1580 312 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 197 IPR000504 GO:0003723
Tpr6g1580 312 Gene3D - 52 198 IPR012677 -
Tpr6g1580 312 MobiDBLite consensus disorder prediction 71 90 - -
Tpr6g1580 312 CDD RRM_SF 119 193 - -
Tpr6g1580 312 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 11 67 - -
Tpr6g1580 312 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 82 273 - -
Tpr6g1580 312 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 11 67 - -
Tpr6g1580 312 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 82 273 - -
Tpr6g1580 312 SMART rrm1_1 118 193 IPR000504 GO:0003723
Tpr6g1580 312 SUPERFAMILY RNA-binding domain, RBD 111 197 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1580 Tpr-Chr6 17058714 17060935 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1580 104 276 Eukaryotic Initiation Factors Gene Family AT1G71770 22.843 2.85e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1580 K12741 - gmx:100776344 208.379