Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1577 ATGAATCTCCAAACCAAAAACTTCCTATCTCTTTTAGTTCCAATAGCTGCAATTTTTGCATCATTTTATCTCATAAATCCAAATCCACAATTCCTAAACAACCTCAAATATTTCAGTTTCACAACTTTGTCACCATCATTTATATACTTAGGCAGAGACCATCATCATAGACCACATAAAAAACATCCTGACACTGGAAGTGATGGTTCTGTTTGTGATGATTTTCCACCAGGAATTCCACCTCCAAATACCAATACAACTTCTTATCTTTGTGTTGATCGAAAAGGGTGTTGTAATTTCACAACTGTTCAACAAGCTGTTAATGCTGTTCCAGATTTTAGCTTAAAAAGAACCATAATTTGGATTAACAGTGGCATCTACTATGAGAAAGTTTTGGTTCCCAAAACCAAACCCAACATTACATTTCAAGGACAAAGCTATACTTCAACAGCAATTGCATGGAATGATACAGCAAAATCTGCTAATGGCACATTTTATAGTGGCTCCGTACAAGTTTTTGCTTCCAACTTCATTGCTAAGAACATAAGTTTCATGAATTTAGCACCAATGCCATCTCCTGGGGCTGAAGGAGCACAAGCAGTAGCAATGAGGATATCAGGAGATCAAGCTGAATTTAGGGGTTGTGGATTTTTTGGAGCACAAGATACCCTTCATGATGACAAGGGTCGTCATTACTTCAAAGATTGCTATATTCAAGGATCCATTGATTTCATATTTGGCAATGCAAGGTCACTTTATGAGAATTGTCAATTAGTTTCTATAGCAAATCCAGTACCACCGGGACAAAAGAACATAAACGGTGCAATTACAGCTCATGGTAGAGTTTCAATGGATGAAAACACAGGATATGTATTTGTTAACAGCACAATAGGAGGCAATGGTAGAATATGGTTAGGTCGAGCATGGAGACCCTATTCTCGTGTTATTTTTGCATTCACAACTATGTCAGATATCATTGCCCCTGAAGGTTGGAATGATTTCAATGACCCTACAAGAGACCAGACTATATTTTATGGAGAGTACAATTGTTCTGGACCAGGGGCTAGTGTAAATATGAGGGCCCCTTATGTACAAAGATTGAATGATACACAAGCTTTTCAATTTCTTAACACAAGTTTTATTGATGGTGATCTATGGTTGGAAACTTAG 1170 0.3726 MNLQTKNFLSLLVPIAAIFASFYLINPNPQFLNNLKYFSFTTLSPSFIYLGRDHHHRPHKKHPDTGSDGSVCDDFPPGIPPPNTNTTSYLCVDRKGCCNFTTVQQAVNAVPDFSLKRTIIWINSGIYYEKVLVPKTKPNITFQGQSYTSTAIAWNDTAKSANGTFYSGSVQVFASNFIAKNISFMNLAPMPSPGAEGAQAVAMRISGDQAEFRGCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGNARSLYENCQLVSIANPVPPGQKNINGAITAHGRVSMDENTGYVFVNSTIGGNGRIWLGRAWRPYSRVIFAFTTMSDIIAPEGWNDFNDPTRDQTIFYGEYNCSGPGASVNMRAPYVQRLNDTQAFQFLNTSFIDGDLWLET* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1577 389 Pfam Pectinesterase 92 384 IPR000070 GO:0030599|GO:0042545
Tpr6g1577 389 PANTHER PECTINESTERASE 8-RELATED 12 388 - -
Tpr6g1577 389 ProSitePatterns Pectinesterase signature 2. 238 247 IPR033131 -
Tpr6g1577 389 Gene3D - 83 389 IPR012334 -
Tpr6g1577 389 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 12 388 - -
Tpr6g1577 389 SUPERFAMILY Pectin lyase-like 89 387 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1577 Tpr-Chr6 17041801 17043938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1577 61 388 Carbohydrate Esterase AT1G05310 71.341 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1577 - - gmx:100806629 676.781