Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1566 ATGGCGTACGCGAAACCCACGAAACCCGGTTTGGAGGAATCACAAGAACAGATCCACAAAATTAGGATCACCCTTTCCTCCAAGCACGTCAAAAATCTCGAAAAGGTTTGTGCTGATTTGGTTCGTGGTGCTAAGGATAAGCATCTTAGAGTGAAGGGACCAGTTAGGATTCCAACTAAGGTTCTTAATATCACTACTAGGAAGACCCCTTGTGGTGAAGGTACCAACACCTGGGACAGATTTGAACTTCGGGTGCACAAGAGAGTCATTGACCTCTACAGTTCCCCGGATGTTGTTAAGCAGATTACCTCTATCACCATTGAACCTGGTGTCGAGGTTGAGGTGACCATTGCAGATGCCTGA 363 0.4656 MAYAKPTKPGLEESQEQIHKIRITLSSKHVKNLEKVCADLVRGAKDKHLRVKGPVRIPTKVLNITTRKTPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1566 120 PRINTS Ribosomal protein S10 family signature 20 33 IPR001848 GO:0003735|GO:0005840|GO:0006412
Tpr6g1566 120 PRINTS Ribosomal protein S10 family signature 55 70 IPR001848 GO:0003735|GO:0005840|GO:0006412
Tpr6g1566 120 PRINTS Ribosomal protein S10 family signature 77 91 IPR001848 GO:0003735|GO:0005840|GO:0006412
Tpr6g1566 120 SMART Ribosomal_S10_2 22 116 IPR027486 -
Tpr6g1566 120 Hamap 30S ribosomal protein S10 [rpsJ]. 18 117 IPR001848 GO:0003735|GO:0005840|GO:0006412
Tpr6g1566 120 PANTHER RIBOSOMAL PROTEIN S10-RELATED 3 119 - -
Tpr6g1566 120 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 3 119 IPR001848 GO:0003735|GO:0005840|GO:0006412
Tpr6g1566 120 Pfam Ribosomal protein S10p/S20e 22 116 IPR027486 -
Tpr6g1566 120 Gene3D Ribosomal protein S10 domain 4 119 IPR036838 -
Tpr6g1566 120 TIGRFAM uS10_euk_arch: ribosomal protein uS10 19 117 IPR005729 GO:0003735|GO:0006412|GO:0015935
Tpr6g1566 120 SUPERFAMILY Ribosomal protein S10 20 117 IPR036838 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1566 Tpr-Chr6 16928291 16930126 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1566 1 120 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 87.705 1.21e-73 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1566 K02969 - gmx:100813093 231.876