Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1556 ATGGATTTGAATTCGAGTTATCAACATCAACTCCAACAAAACCAACCAAATTCGAGGTTGCTTCGTTTTCGCTCTGCGACTAGTTCAGATCATATTCGATCAAATTTCAAACAAGGTGGTGAAGGTTGTGGTGGCAGTGCTTCCACTGCCACCGATAATAATGAAACTGCAGAGAGGTTAGTTTTGAGATTCAACAATTCTGGTGAAGCTTCTTCATCTAGCTTTCGACAATTCATGGATCGTAATCCTTCTAATCATAGTAGTTCTAGTGCAAGTTCAAGCATGATGGTTGGTTCTTCTATGGGAATGGATCAAACTAATAGGACTACTTCCCCTGCTGGCCATTTCTCCAACAACAACATCATCTCCTTTGCAAATGGGTATGATACTATGAAAGGTGTTGAAAACTATGATGGGGTGAATGACAGTGATGGTGAACTTACTCTATCCATGAACATATTAAAAAATCAAATTGGCTTCTCACCAAAAAGTCATTCTTCTTTGGGAAGGTTATCACACAACTCGAAAACGAGGAGCGTCGGCATTGGGACAACTCGCCATGATGATGGAAGACAAGATGGCAACGATGACACAGAATATTATGGTCATAAATTTCTTTATGATTCTAATGATCAGAATATTGAGGCAGGAAATCAAGTTAATACACTATCACATCACTTGAGTTTGCCAAGAAAATCATCAGAGATGTTTGTTGTGGAGAATTTGCTTCAGTTCCCAGATTCTGTTCCAAGTAGTATCAGAGCTAAGAGAGGCTTTGCAACACATCCTAGAAGTGTTGCCGAAAGGGTAAGAAGAACTCGGATAAGTGAACGAATGAGAAAGTTGCAAGAGCTTGTTCCAAACATCGACAAGCAAATTTGCACATCAGACATGTTGGAATTGGCTGTAGATTACATTAATGATCTTCAAAAACAATTGAAGATTATGACTGCAAAAAGAGCTAAATGCAGATGCAGAAATCAGAAATGA 990 0.3889 MDLNSSYQHQLQQNQPNSRLLRFRSATSSDHIRSNFKQGGEGCGGSASTATDNNETAERLVLRFNNSGEASSSSFRQFMDRNPSNHSSSSASSSMMVGSSMGMDQTNRTTSPAGHFSNNNIISFANGYDTMKGVENYDGVNDSDGELTLSMNILKNQIGFSPKSHSSLGRLSHNSKTRSVGIGTTRHDDGRQDGNDDTEYYGHKFLYDSNDQNIEAGNQVNTLSHHLSLPRKSSEMFVVENLLQFPDSVPSSIRAKRGFATHPRSVAERVRRTRISERMRKLQELVPNIDKQICTSDMLELAVDYINDLQKQLKIMTAKRAKCRCRNQK* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1556 329 MobiDBLite consensus disorder prediction 81 105 - -
Tpr6g1556 329 Gene3D - 261 329 IPR036638 GO:0046983
Tpr6g1556 329 PANTHER TRANSCRIPTION FACTOR BHLH130 14 328 - -
Tpr6g1556 329 MobiDBLite consensus disorder prediction 165 195 - -
Tpr6g1556 329 MobiDBLite consensus disorder prediction 33 52 - -
Tpr6g1556 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 262 326 IPR036638 GO:0046983
Tpr6g1556 329 Pfam Helix-loop-helix DNA-binding domain 265 310 IPR011598 GO:0046983
Tpr6g1556 329 MobiDBLite consensus disorder prediction 165 181 - -
Tpr6g1556 329 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 14 328 - -
Tpr6g1556 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 259 309 IPR011598 GO:0046983
Tpr6g1556 329 SMART finulus 265 315 IPR011598 GO:0046983
Tpr6g1556 329 Coils Coil 306 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1556 Tpr-Chr6 16860433 16863110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1556 68 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 44.275 3.24e-46 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr6g1556 HLH 4.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1556 - - mtr:MTR_7g092540 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1556 6 16860433 16863110 Tpr6g1556 6 16860433 16863110 ECH
Tpr6g1556 6 16860433 16863110 Tpr3g2157 3 19912057 19915690 ECH