Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1554 ATGGAACAACAACCTACTGGAACCATTCACGCACTCGATTCCGTTCAATTTAACGAAGAAATCCAAGGAATTATGATTCCAGCACCGGCACCGGAAAACGCAAGCTCATTCACAGCACTACTTGAGCTTCCACCGACTCAGGCCGTAGAGCTACTTCATTTACCGGATTGCGACGGAACTGATTCCGGAAGATTATCTTGTTGCCACGTCAGCGTGAATCAGAAACCCTATCTTCAGAATTCTTCCAACGGTAATTTGACTTTTCCTACTAACGCTGCGTTAATTGAACGCGCTGCGAAATTCTCAGTGTTTGCTGGAGAGAATACTTCACCGGGAGAGGTGCGGTTGTTTCCGGCGGTGTCTGGACTGAATTTAGAAAGTGTGAAGAATGAGCCACAAGAGACAGATTCGAATCCTTGTTCGACTCAAGAGTGTGTTTCGGATCCTGCTGTTGAGAATAAGAATCAGAGAAACGTGAAGAGAAAAGAGCGGGAGAAGAAGGCTAAACCGTCGTCAAAGAAGAGCAAAAGCGTCGCCGATGAAACCTCCGGCGACGGTGAGAAGCTTCCGTACGTCCATGTTCGCGTTCGACGGGGTCAAGCTACTGATAGTCATAGCTTAGCAGAACGAGCTAGGAGAGAGAAGATTAATGCTCGTATGAAGCTTTTACAAGAGCTGGTCCCAGGCTGCGACAAGATATCTGGAACAGCATTGGTTCTGGATGAAATCATCAACCATGTTCAAACTCTACAACGTCAAGTGGAGGGGTCATCTTTAATGGACAGTAATTTACCTAGCATGGTTACGCCTCTCATGTGGCCAGAAATCCCACTCAACATTAACAGACCGCATTATCAACAGCAATGGCAATTAGATGCATTCCATCAACCACTTTGGGGAAGGGAAGAAGACAACCATCATTTCATGACTCCGGAAAACTCACTTTTGAGTTATGACTCCCCGGCTAATTCAGCATCTTTGCACTCAAATCAATTGAAGATGGAGCTCTGA 1011 0.4609 MEQQPTGTIHALDSVQFNEEIQGIMIPAPAPENASSFTALLELPPTQAVELLHLPDCDGTDSGRLSCCHVSVNQKPYLQNSSNGNLTFPTNAALIERAAKFSVFAGENTSPGEVRLFPAVSGLNLESVKNEPQETDSNPCSTQECVSDPAVENKNQRNVKRKEREKKAKPSSKKSKSVADETSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTALVLDEIINHVQTLQRQVEGSSLMDSNLPSMVTPLMWPEIPLNINRPHYQQQWQLDAFHQPLWGREEDNHHFMTPENSLLSYDSPANSASLHSNQLKMEL* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1554 336 Gene3D - 197 269 IPR036638 GO:0046983
Tpr6g1554 336 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 11 256 - -
Tpr6g1554 336 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 257 336 - -
Tpr6g1554 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 198 270 IPR036638 GO:0046983
Tpr6g1554 336 MobiDBLite consensus disorder prediction 129 153 - -
Tpr6g1554 336 MobiDBLite consensus disorder prediction 129 190 - -
Tpr6g1554 336 MobiDBLite consensus disorder prediction 170 190 - -
Tpr6g1554 336 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 11 256 IPR024097 GO:0006355
Tpr6g1554 336 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 257 336 IPR024097 GO:0006355
Tpr6g1554 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 200 250 IPR011598 GO:0046983
Tpr6g1554 336 Pfam Helix-loop-helix DNA-binding domain 204 251 IPR011598 GO:0046983
Tpr6g1554 336 SMART finulus 206 256 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1554 Tpr-Chr6 16825102 16831089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1554 11 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 47.978 1.38e-85 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr6g1554 HLH 2.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1554 - - gmx:100795486 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1554 6 16825102 16831089 Tpr6g1554 6 16825102 16831089 ECH