Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1549 ATGTCTACATTCTGTATATACCTGTTCTTTCTTTCCTTAACCTTTTCAATCTTCAACTTCAACCTCACTTCATCATCTTCATCACAAGAACTTCAAACCCTTCTTTCATTCAAATCCACCATTCAAGACACCAAAAACACTTTATCAACTTGGTCAAACACTTCACAAACCCATTTCTGTAACTGGACTGGTATCTCTTGTTCTTCTTCTTCTTCTTCACCACTATCAGTAACCTCTGTTAACCTTCAAAGCTTAAATCTTTCTGGTGATATCTCATCTTCCATTTGTGACCTTCCAAATCTCTTTGATCTTAACCTTGCTAATAATGTTTTCAACCAACCTATTCCTCTTCATCTTTCTCAATGTAGTTCATTGAAAAGTTTGAATCTTAGTAATAATCTTATTTGGGGTACTATCCCATCTCAGATTTCACTTTTTGTTTCATTATCTGTGCTTGATTTGAGTAGAAATCATATTGAAGGAAATGTTCCAGATACTTTAGGTTCATTGAAGAATCTTCAAGTGCTTAATATGGCTAATAATTTGCTTTCTGGTGATGTACCTAAGGTGTTTGGTAATTTTACTAAGTTAGAAATTCTTGATTTGTCTGAAAATCCTTACTTGGTTAGTGAGATTCCAGAGGATATTGGTCAGCTTGGGAATCTAAAGCAGCTTTTTTTGCAAAGTTCTTCTTTTCAAGGTGAAATTCCTGAGTCTTTGAAGGGTTTGACTAGTTTAAGTTATTTAGATCTCTCTCAGAATAATCTAACTGGTGAGGTTCCTAAGACTCTTGTGAGTTCTCTTAAGAATCTTGTTTCTTTTGATGTTTCACAAAATAAGCTTAAAGGGTCATTTCCAAATGGTTTGTGTAGTGGAAAAGTGCTTATAAATTTAAGTCTTCACACAAATAGTTTCACTGGTTTAATACCAAACACAACTAGTGAGTGTAAGAGTCTTGAGAGATTTCAAGTTCAGAACAATGGTTTCTCTGGTGATTTTCCTGTTGTGTTATTTTCACTTCCTAAAATTAAGCTCATTAGAGGTGAAAACAATAGATTCACAGGACAAATACCTGAGTCAATCTTAGAAGCTGTTCAGTTAGAACAAGTTCAGCTTGATAATAATCTTTTTGATGGTAAAATTCCTTTAGGTCTTGGTTTTGTTAAAAGCTTATACAGATTTTCTGCTTCTCTTAATCATTTCTATGGTGAACTTCCTCCTAATTTTTGTGACTCACCAGTTATGAGTATAGTGAATCTCTCTCATAACTCTCTTTCTGGTCATATACCTCAGTTGAAAAAATGCAGGAAATTAGTTTCACTTTCTTTAGCTGATAACAGTTTCACAGGAGAAATTCCTTCTTCTCTAGCTGAATTACCTGTGCTTACTTACCTTGATCTTTCAGATAACAATCTCACTGGTTCAATTCCATTAGGGCTTCAAAACTTGAAGCTTGCTCTTTTCAATGTTTCCTTTAATCAGTTATCAGGTAAAGTGCCATACTCATTGATATCTGGTCTTCCTGCATCATTTTTGGAAGGTAATCCTTCTCTTTGCGGTCCCGGATTGCCGAATTCATGTTCTGATGACAAGCCAAGACACCATTCTGCTTCTGGTCTTACAACCTTGACATGTGCTTTGATCTCTCTAGCATTTGTTGCTGGAACTGCTCTTGTTGCTGGTGGTTTTATATTGTATAGGAGATCTTGTAAAGAGAATGAAGCTGCGGTGTGGCGTTCGGTGTTTTTCTTTCCTCTGAGAATTACTGAGCATGATCTTGTTATAGGGATGAATGAGAAAAGCTCAATAGGAAATGGAGTTTTTGGGAATGTTTATGTTGTGAGGTTACCTAGTGGTGATTTAGTATCTGTGAAGAAGTTGGTTAAATTTGGAAACCAGTCTTCAAAGAGTTTGAAAGTTGAGGTCAAAACTTTGGCTAAAATTAGGCATAAGAATATTGTTAAGATTCTTGGGTTTTGCCATTCTGATGAGTCAGTTTTTCTTATTTATGAATACTTGCATGGTGGGAGCTTAGGAGACTTGATTTCTAGTCAGAATTTTGAGTTGCATTGGGGAGTTAGATTAAGGATTGCTATTGGAGTTGCTCAAGGACTTGCATATCTTCACAAGGATTATGTTCCACACTTGGTTCATAGAAATGTCAAGTCAAAGAACATTCTGTTGGATGTTAACTTTGAGCCAAAACTTACACATTTTGCTCTTGATAGGATTGTTGGAGAACCTGCATTTCAATCAACTTTGGATTCTGAAGCTGCATCTTCTTCTTGTTACATTGCTCCAGAATATGGTTACAACAAAAAAGCAAGTGAACAATTGGATGTGTACAGCTTTGGTGTTGTATTGCTAGAGCTAGTTTGTGGAAGACAAGCAGAGCAAACCGATTCAAGTGAGTCCTCACTTGACATAGTGAAATGGGTTAGAAGGAAAGTGAACATTACTAATGGAGTGCACCAAGTTCTTGACAGTAAAATATCACAAACTTGTCACAAAGAAATGGTTGGTGCTTTAGATATTGCTCTACGTTGCACTTCTGTGGTACCTGAAAAAAGGCCATCAATGTTAGATGTTGTTAGAGGTCTTCAGTCTCTTGAGTCAAGGACTTGTGTTGCAAATTTGCAGGGTCCAAATGGTGAACCCTCCATTGCTGTTTGA 2673 0.3621 MSTFCIYLFFLSLTFSIFNFNLTSSSSSQELQTLLSFKSTIQDTKNTLSTWSNTSQTHFCNWTGISCSSSSSSPLSVTSVNLQSLNLSGDISSSICDLPNLFDLNLANNVFNQPIPLHLSQCSSLKSLNLSNNLIWGTIPSQISLFVSLSVLDLSRNHIEGNVPDTLGSLKNLQVLNMANNLLSGDVPKVFGNFTKLEILDLSENPYLVSEIPEDIGQLGNLKQLFLQSSSFQGEIPESLKGLTSLSYLDLSQNNLTGEVPKTLVSSLKNLVSFDVSQNKLKGSFPNGLCSGKVLINLSLHTNSFTGLIPNTTSECKSLERFQVQNNGFSGDFPVVLFSLPKIKLIRGENNRFTGQIPESILEAVQLEQVQLDNNLFDGKIPLGLGFVKSLYRFSASLNHFYGELPPNFCDSPVMSIVNLSHNSLSGHIPQLKKCRKLVSLSLADNSFTGEIPSSLAELPVLTYLDLSDNNLTGSIPLGLQNLKLALFNVSFNQLSGKVPYSLISGLPASFLEGNPSLCGPGLPNSCSDDKPRHHSASGLTTLTCALISLAFVAGTALVAGGFILYRRSCKENEAAVWRSVFFFPLRITEHDLVIGMNEKSSIGNGVFGNVYVVRLPSGDLVSVKKLVKFGNQSSKSLKVEVKTLAKIRHKNIVKILGFCHSDESVFLIYEYLHGGSLGDLISSQNFELHWGVRLRIAIGVAQGLAYLHKDYVPHLVHRNVKSKNILLDVNFEPKLTHFALDRIVGEPAFQSTLDSEAASSSCYIAPEYGYNKKASEQLDVYSFGVVLLELVCGRQAEQTDSSESSLDIVKWVRRKVNITNGVHQVLDSKISQTCHKEMVGALDIALRCTSVVPEKRPSMLDVVRGLQSLESRTCVANLQGPNGEPSIAV* 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1549 890 Pfam Leucine rich repeat 221 281 IPR001611 GO:0005515
Tpr6g1549 890 Pfam Leucine rich repeat 148 205 IPR001611 GO:0005515
Tpr6g1549 890 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Tpr6g1549 890 Gene3D Transferase(Phosphotransferase) domain 1 673 880 - -
Tpr6g1549 890 SUPERFAMILY Protein kinase-like (PK-like) 600 866 IPR011009 -
Tpr6g1549 890 SUPERFAMILY L domain-like 208 501 - -
Tpr6g1549 890 Gene3D Ribonuclease Inhibitor 264 530 IPR032675 -
Tpr6g1549 890 ProSiteProfiles Leucine-rich repeat profile. 461 484 IPR001611 GO:0005515
Tpr6g1549 890 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 7 878 - -
Tpr6g1549 890 ProSiteProfiles Leucine-rich repeat profile. 124 146 IPR001611 GO:0005515
Tpr6g1549 890 ProSiteProfiles Protein kinase domain profile. 597 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g1549 890 PRINTS Leucine-rich repeat signature 246 259 - -
Tpr6g1549 890 PRINTS Leucine-rich repeat signature 459 472 - -
Tpr6g1549 890 ProSitePatterns Protein kinases ATP-binding region signature. 603 626 IPR017441 GO:0005524
Tpr6g1549 890 PANTHER OSJNBB0022F23.6 PROTEIN 7 878 - -
Tpr6g1549 890 SUPERFAMILY L domain-like 26 290 - -
Tpr6g1549 890 Pfam Protein kinase domain 598 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g1549 890 Gene3D Ribonuclease Inhibitor 27 187 IPR032675 -
Tpr6g1549 890 SMART LRR_typ_2 170 193 IPR003591 -
Tpr6g1549 890 SMART LRR_typ_2 243 267 IPR003591 -
Tpr6g1549 890 SMART LRR_typ_2 146 169 IPR003591 -
Tpr6g1549 890 SMART LRR_typ_2 194 219 IPR003591 -
Tpr6g1549 890 SMART LRR_typ_2 459 482 IPR003591 -
Tpr6g1549 890 SMART LRR_typ_2 98 122 IPR003591 -
Tpr6g1549 890 SMART LRR_typ_2 268 292 IPR003591 -
Tpr6g1549 890 Gene3D Phosphorylase Kinase; domain 1 591 672 - -
Tpr6g1549 890 Pfam Leucine Rich repeat 461 474 IPR001611 GO:0005515
Tpr6g1549 890 Gene3D Ribonuclease Inhibitor 188 242 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1549 Tpr-Chr6 16786025 16789581 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1549 29 870 Receptor kinase-like Gene Family AT5G06940 62.411 0.0 1027
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tpr6g1549 Pkinase 2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1549 - - gmx:100794428 1382.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1549 6 16786025 16789581 Tpr6g1549 6 16786025 16789581 ECH