Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1546 ATGGAGATAGATAACAGTGAGATGAAGTCAAAGAAGATGGAAGAGTATGAAGTTATAGAACAAATTGGTAGAGGAGCATTTGGTTCTGCTTTTCTTGTTCTTCATAAGTCTGAGAAAAAGAGGTATGTGCTGAAAAAGATTCGTTTGGCTAAGCAGACAGAGAAGTTCAAAAGAACAGCACACCAAGAGATGAATCTGATTGCAAAACTGAATAATCCATATATTGTGGATTACAAAGATGCTTGGGTGGAGAAGGAGGACCATGTATACATTATAACTGGCTATTGTGAAGGCGGTGACATGGCTGAGAGCATTAAGAAAGCTCGAGGATCATTTTTTCCTGAGGAGAAGGTCTGCAAATGGCTAACTCAATTGTTGATAGCTGTAGATTACTTGCACTCTAACCGTGTAATCCACAGGGATCTTAAGTGTTCCAACATATTCCTCACCAAGGACAACAGTATTCGGCTCGGTGACTTTGGTCTTGCAAAGCGACTTAATGGAGAAGACCTTGCTTCCTCGGTCGTTGGAACTCCAAATTACATGTGTCCCGAGCTCCTCGCGGACATACCATATGGTTATAAATCTGATATATGGTCTCTCGGTTGCTGCATGTTTGAGATTGCTGCACATCAATCAGCATTTCGTGCTCCGGACATGGCTGGTCTTATCAATAAAATAAACAGATCCTCCATTTCTCCCCTTCCAATTGTTTATTCTCCCACACTGAAACAAATTATCAAGAGCATGCTGAGGAAAAATCCAGAACATAGGCCAACCGCTGCCGAATTGTTAAGACATCCACATTTACAACCTTATGTTATTCGCTGTCAGAACGCATCATCTAATGTTCTTCCAATATATCCCTTAGTTAACTCAAAGGATAAAACAAAAAGATCTCCCAAATCTAGTAGCAGAGAAATGGGATTTGTAAATCGTTTGGAACGGGTTCATCCTATTGAGGGAAATGGTGATGTACAGACAAGAAATCTTCGTAACAATGGTGAGGTAACAATCTCAACAAGCACTCAATACAACCTTGAGAACAAGATGGATGCTCTTACAAGATACACAGTCGAATCTTCTACTAGTATTAGCGACTCAAAAGATGGTTCAACAACATCTGAATCAACTACTTGTAGTGTGTGCAAGGAGGACTATAAAATTAGACCACCAAGGGAAATGGCTAACAATGGAATCACCTTGAAGAGCATACACGATTCTCTGCATGAAGAAGAACAAAGATTTGCTGCAGCGACCACCGAAGTTGAAGATACCTTCTCGAGGGAAGGTTTTGGTAATGCCGAAGCGCATAGGGAACATGCCAAACTTGATGACCTCAGGAAATCGACTACTTCCAGTGCAGGCAGTAGCAGCACTGACAAAAGCAATTCAATTAACGAGGAAAGTTCATCGCTAATAATGCATCCTCTCAGGGTTGAACATGACAGTACTGAGTCCGGAGACTACTCGAAGAAAAATGAAAACCGTGATTCCTTTACAGAAGAAGGCTTGCATATAAACGGCTTGTCGTTAGAGAGTATTGATAATCATAATACCAATACACTTGGAGTTCAGGATGATAGTATAGCAAAACAACGCATTATTTGCTCCACACAGAAAGATGATAATGTAACACCAAACGGAATTTCATTGAGTGTAGTTACTGCAACAGATGGTGACAGTGACGAAACAATCAAGGATGCATTGGATAGTCCATGCCAGAAAAGAGCCGATGCATTGGAATCTCTGCTTGAGTTATGTGCTCAATTACTCAAACAAGATAAACTTGAAGAGCTCGCTGGCGTGTTAAGACCATTTGGAAAAGAAGCTGTATCATCAAGAGAAACAGCAATATGGTTGACAAAAAGCCTCATATCTGCTCAAAAGTTTAACCCTGAAAACTAG 1908 0.4062 MEIDNSEMKSKKMEEYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVDYKDAWVEKEDHVYIITGYCEGGDMAESIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNSIRLGDFGLAKRLNGEDLASSVVGTPNYMCPELLADIPYGYKSDIWSLGCCMFEIAAHQSAFRAPDMAGLINKINRSSISPLPIVYSPTLKQIIKSMLRKNPEHRPTAAELLRHPHLQPYVIRCQNASSNVLPIYPLVNSKDKTKRSPKSSSREMGFVNRLERVHPIEGNGDVQTRNLRNNGEVTISTSTQYNLENKMDALTRYTVESSTSISDSKDGSTTSESTTCSVCKEDYKIRPPREMANNGITLKSIHDSLHEEEQRFAAATTEVEDTFSREGFGNAEAHREHAKLDDLRKSTTSSAGSSSTDKSNSINEESSSLIMHPLRVEHDSTESGDYSKKNENRDSFTEEGLHINGLSLESIDNHNTNTLGVQDDSIAKQRIICSTQKDDNVTPNGISLSVVTATDGDSDETIKDALDSPCQKRADALESLLELCAQLLKQDKLEELAGVLRPFGKEAVSSRETAIWLTKSLISAQKFNPEN* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1546 635 SUPERFAMILY Protein kinase-like (PK-like) 13 323 IPR011009 -
Tpr6g1546 635 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 10 470 - -
Tpr6g1546 635 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 474 618 - -
Tpr6g1546 635 MobiDBLite consensus disorder prediction 475 498 - -
Tpr6g1546 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Tpr6g1546 635 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Tpr6g1546 635 CDD STKc_Nek 16 270 - -
Tpr6g1546 635 ProSiteProfiles Protein kinase domain profile. 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g1546 635 MobiDBLite consensus disorder prediction 449 472 - -
Tpr6g1546 635 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Tpr6g1546 635 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 474 618 - -
Tpr6g1546 635 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 10 470 - -
Tpr6g1546 635 SMART serkin_6 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g1546 635 MobiDBLite consensus disorder prediction 432 448 - -
Tpr6g1546 635 Gene3D Transferase(Phosphotransferase) domain 1 98 334 - -
Tpr6g1546 635 MobiDBLite consensus disorder prediction 432 498 - -
Tpr6g1546 635 Pfam Protein kinase domain 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1546 Tpr-Chr6 16757343 16762768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1546 9 271 MAP Kinase Kinase Kinase AT3G13530 33.208 9.43e-39 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Tpr6g1546 Pkinase 3.7e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1546 K08857 - gmx:100793379 917.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1546 6 16757343 16762768 Tpr6g1546 6 16757343 16762768 ECH