Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1545 ATGGCTAATAACCCTTACTCTAATCTTTTCTCATCTTCATCATCAACTTTCTTCAAATTCAACCATATTTTACCATCTTCAAACCCTTCTCCACATCACCACAACAACCCTTTTCTTCACCACCACAACTTCATTAACAACAACCACTCATTTTTCCATTATACTTCACCACCTTCTCCTCCTCTCAGAGAAGAACTACCCCTTTTAAGCCTAATTCCAGCAAAACAAGAACAAGAATATGAAGATCAACAATCACATCAAGATATTCAAGATCAATACCTTCCTTGCACTGCCATGGATTTAGAAGAAAGAGAAGAAGATGGAACTAGTTCTTCTTCTACTACTGTCACTGTTGCACTTCACATAGGTTTACCAAACCCTAGTGCTGCTGAAATGGCTTCTCTACTTTCTTCTTCTAACTCCTCAGATATCACTGCTGATAATAACAAAGAACATGGTGAGGATTCTTGTTCAGGATTCATGGTTAATAATAGACTTAACAAAGGACAATATTGGATCCCTACTCCTTCTCAGATTCTCATTGGTCCTACTCAATTCTCTTGCCCTGTTTGCTCCAAAACCTTCAATAGATATAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGTCCTGAATCTCTAAGAGGAACACAACCAACAGGAATGTTAAGACTACCTTGTTACTGTTGTGCACAAGGATGTAGAAACAACATTGATCATCCAAGAGCAAAGCCATTGAAAGATTTTAGAACACTTCAAACACATTACAAGAGAAAACATGGAATTAAACCTTTCATGTGTAGAAAATGTAGCAAAGCTTTTGCTGTTAGAGGAGATTGGAGAACTCATGAAAAGAATTGTGGCAAGTTATGGTATTGTATTTGTGGTTCTGATTTCAAACATAAGAGATCTCTTAAAGATCATATTAAAGCTTTTGGAAATGGTCATGCTGCTTTTGGATGTGATGGATTTGAAGAAGAAGATGAACCTGCTTCTGAAGTCGAGCAGGATAATGAATAA 1035 0.3729 MANNPYSNLFSSSSSTFFKFNHILPSSNPSPHHHNNPFLHHHNFINNNHSFFHYTSPPSPPLREELPLLSLIPAKQEQEYEDQQSHQDIQDQYLPCTAMDLEEREEDGTSSSSTTVTVALHIGLPNPSAAEMASLLSSSNSSDITADNNKEHGEDSCSGFMVNNRLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAQGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCSKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAFGCDGFEEEDEPASEVEQDNE* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1545 344 Pfam Zinc finger, C2H2 type 186 205 IPR013087 -
Tpr6g1545 344 ProSitePatterns Zinc finger C2H2 type domain signature. 188 208 IPR013087 -
Tpr6g1545 344 SMART c2h2final6 233 265 IPR013087 -
Tpr6g1545 344 SMART c2h2final6 186 208 IPR013087 -
Tpr6g1545 344 SMART c2h2final6 270 290 IPR013087 -
Tpr6g1545 344 PANTHER ZINC FINGER PROTEIN WIP2 33 344 IPR043584 GO:0003700|GO:0010468
Tpr6g1545 344 Gene3D Classic Zinc Finger 247 325 - -
Tpr6g1545 344 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 33 344 - -
Tpr6g1545 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 186 213 IPR013087 -
Tpr6g1545 344 SUPERFAMILY beta-beta-alpha zinc fingers 182 208 IPR036236 -
Tpr6g1545 344 Gene3D Classic Zinc Finger 185 208 - -
Tpr6g1545 344 SUPERFAMILY beta-beta-alpha zinc fingers 252 290 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1545 Tpr-Chr6 16732443 16735231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1545 62 344 C2H2 Transcription Factor Family AT3G57670 68.790 1.88e-139 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr6g1545 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1545 - - qsu:112003411 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1545 6 16732443 16735231 Tpr6g1545 6 16732443 16735231 ECH