Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1539 ATGGAGGGAGGAGCGAGTAAGAAGAAAGCACCACCTCTCTCTTTGGAGCAATTCATCTCTATCACCACCCCTCTTCTCGACTTGGAAAAGGATGCTGAGATATCGAGCTCAATTGCAACTGGCGCCTCGAGGAATTTGGATACTGCTCAAAAGAGAGGATCAACAATCCTTAACTTGAAGTGTGTAGATGTTCAGACGGGGCTTATGGGAAAGTCTTTGATTGAATTTCAATCCACAAAAGCAGATGTGCTTCCTGCACACAAGTTTGGTACTCATGATGTTGTTGTTTTAAAACTCAACAAGGCTGATTTAGGTTCTCCTGCTCTTGGGCAAGGTGTAGTTTACAGATTGAAGGACTCATCAATTACTGTTGCTTTTGATGATATACCAGAAGATGGATTAAACAGTCCCCTAAGGCTGGAAAAAGTTGCAAATGAGGTGACATATCACAGGATGAAAGATGCATTAGTACAGTTGAGTAAAGGAGTGCATAAGGGTCCTGCTTCTGATCTAATACCTGTCTTGTTTGGGGAGAGGCAACCAACAGTGTCCAAGAAGGATGTATCATTCACTTCCATTAATAGAAATCTTGATCACTCTCAGAAAGATGCAATTACAAAAGCCCTATCGTCGAAGAATGTTTTCTTGCTACATGGACCTCCTGGAACAGGAAAAACTACAACAGTGGTGGAAATTATATTACAAGAAGTAAAACGTGGATCTAAGATTCTCGCTTGTGCTGCATCAAATATTGCTGTTGACAACATCGTTGAGCGGCTAGTTCCACACAAAGTTAAGCTGGTGAGGATTGGTCATCCCGCACGTTTATTGCCTCAAGTGCTCGATAGTGCATTGGATGCTCAGGTACTACGAGGAGATAATAGTGGTCTCGCAAATGACATTCGAAAAGAAATGAAGGTATTGAATGGAAAGCTGCTAAAAACCAAAGAGAAAAATACAAGGAGGGAGATACAGAAGGAACTTAGGATTCTATCTAGAGAAGAGCGGAAAAGGCAGCAGCTTGCTGTTACAGACGTAATTAAAACTGCAGATGTAATATTAACTACTCTGATTGGGGCTTTCACTAAGAAACTTGACCGCACATCATTTGATTTGGTGATTATCGACGAAGCTGCTCAAGCACTTGAGATAGCATGCTGGATACCTCTGCTAAAGGGTACAAGATGTATACTTGCAGGAGATCATCTTCAACTTCCTCCAACCATTCAAAGTGTTGAAGCTGAGAAGAAAGGCTTAGGAAGAACCCTCTTCGAACGACTTGCTGAACTGTATGGAGATGAAGTCACATCTATGCTTACTGTCCAGTATCGTATGCATCAACTTATCATGGATTGGTCTTCTAAAGAGCTTTATAACAGTAAGGTCAAGGCTCATCCAAGTGTTGCTGCACATATGCTATATGATCTTGAGGATGTGAAGAGGACATCTTCAACTGAACCAACCCTTCTTCTCATAGACACAGATGGATGTGACATGGATGAAAAGAAAGATGAAGAAGATAGCACCCTTAATGAAGGAGAATCTGAAGTTGCTATGGCTCATGCAAAGCGATTAGTGCAAAGCGGGGTGCTCCCTTCTAATATTGGAATTATTACCCCATATGCTGCCCAGGTTGTTTTACTTAAGATGTTGAGAAACAAGGAGAACTCGCTGAAGGATATTGAAATCTCAACAGTTGATGGTTTCCAGGGTAGGGAGAAGGAAGCCATTATTATATCAATGGTTCGATCAAATTCAAAAAAGGAGGTGGGCTTTCTGAGTGATCGGCGGCGAATGAATGTGGCCGTGACACGGGCAAGAAGGCAATGCTGTATTGTCTGTAATAGGGAGACAGTTAGTAGTGATGGATTTCTAAAGCGGTTGGTTGAATATTTTGAAACGCACGGTGAATATCAGAGTGCATCTGAGTACCAGAATGAGTAG 1944 0.4192 MEGGASKKKAPPLSLEQFISITTPLLDLEKDAEISSSIATGASRNLDTAQKRGSTILNLKCVDVQTGLMGKSLIEFQSTKADVLPAHKFGTHDVVVLKLNKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYHRMKDALVQLSKGVHKGPASDLIPVLFGERQPTVSKKDVSFTSINRNLDHSQKDAITKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHKVKLVRIGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKVLNGKLLKTKEKNTRREIQKELRILSREERKRQQLAVTDVIKTADVILTTLIGAFTKKLDRTSFDLVIIDEAAQALEIACWIPLLKGTRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAELYGDEVTSMLTVQYRMHQLIMDWSSKELYNSKVKAHPSVAAHMLYDLEDVKRTSSTEPTLLLIDTDGCDMDEKKDEEDSTLNEGESEVAMAHAKRLVQSGVLPSNIGIITPYAAQVVLLKMLRNKENSLKDIEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCIVCNRETVSSDGFLKRLVEYFETHGEYQSASEYQNE* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1539 647 Gene3D - 443 647 IPR027417 -
Tpr6g1539 647 SMART AAA_5 211 433 IPR003593 -
Tpr6g1539 647 CDD DEXXQc_SMUBP2 196 444 - -
Tpr6g1539 647 Gene3D - 41 143 - -
Tpr6g1539 647 CDD SF1_C_Upf1 445 633 IPR041679 -
Tpr6g1539 647 TIGRFAM TIGR00376: putative DNA helicase 345 642 IPR004483 GO:0003677|GO:0005524
Tpr6g1539 647 Pfam AAA domain 420 616 IPR041679 -
Tpr6g1539 647 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 13 644 - -
Tpr6g1539 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 627 IPR027417 -
Tpr6g1539 647 PANTHER HELICASE WITH ZINC FINGER 2 13 644 - -
Tpr6g1539 647 SMART ultradead3 193 444 IPR014001 -
Tpr6g1539 647 Gene3D - 23 427 IPR027417 -
Tpr6g1539 647 Pfam AAA domain 197 411 IPR041677 GO:0004386
Tpr6g1539 647 Coils Coil 298 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1539 Tpr-Chr6 16665979 16671955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1539 170 380 Core DNA Replication Machinery Family AT1G08840 27.014 1.10e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1539 K19036 - gmx:100810545 1143.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1539 6 16665979 16671955 Tpr6g1539 6 16665979 16671955 ECH