Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1538 ATGATGGATACTTGCAAGAAATCTCCCTTGAAACCATGGAAGAAAGGGCCAACCAGGGGGAAAGGTGGCCCTCAAAATGCTGCATGTGAGTATCGAGGCGTTCGCCAGAGAACGTGGGGAAAATGGGTTGCTGAGATCAGAGAGCCAAAGAAGAGAACTAGACTCTGGCTTGGTTCTTTCGCAACTGCGGAAGAAGCTGCAATGGCTTATGATGAAGCTGCAAGGAGACTCTATGGACCAGATGCATACCTTAATCTTCCACACTTGCAGCCACACTCAGTTTCGTCTATCAAAACTGGAAAGTTCAAGTGGTTGCCTTCAAAGAATTTCATTTCAATGTTCCCTTCTTGTGGATTACTCAATGTAAATGCTCAACCTAGTGTTCATTTAATCCATCAGAGGCTACAAGAGTTTAAGCAGAATGCAGTTGCTGCAAGTCAATCATCGCTTTCTAGTTCATCTAATGATCGAAAGGCAGAAGAAAATCAGAATGTAGAGAGCAACAAGAATCATGCAGAAAATCCACCAAAGGAAAAAGATGTTCAAACATCGGCGAATAAGATGCTTGGAGATTTTCAAGAGGAGAAACCACAGATAGACCTACATGAGTTTCTTCAACAGATGGGAATACTGAAAGAAGAAACACACTCGGAGCAAACTGAGAGTTCGGGAAGTTCAACAGTGCATGAAGCGGTGTCAAAAGATGATAATAATCAATTGGGAATATTTTCTGACACAAGTGTTAATTGGGAGGCATTGATCGAGATGCATGGATTTGCAGATATTCCGGAATCAGAAGCCACGCAGCTCGAAGCATATGACCCAAATGACCATCTTAATTTCTCAACTTCCATTTGGAACTTTTAG 867 0.4233 MMDTCKKSPLKPWKKGPTRGKGGPQNAACEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLQPHSVSSIKTGKFKWLPSKNFISMFPSCGLLNVNAQPSVHLIHQRLQEFKQNAVAASQSSLSSSSNDRKAEENQNVESNKNHAENPPKEKDVQTSANKMLGDFQEEKPQIDLHEFLQQMGILKEETHSEQTESSGSSTVHEAVSKDDNNQLGIFSDTSVNWEALIEMHGFADIPESEATQLEAYDPNDHLNFSTSIWNF* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1538 288 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Tpr6g1538 288 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
Tpr6g1538 288 CDD AP2 29 89 IPR001471 GO:0003700|GO:0006355
Tpr6g1538 288 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Tpr6g1538 288 Gene3D AP2/ERF domain 30 88 IPR036955 GO:0003700|GO:0006355
Tpr6g1538 288 Pfam AP2 domain 29 79 IPR001471 GO:0003700|GO:0006355
Tpr6g1538 288 MobiDBLite consensus disorder prediction 1 27 - -
Tpr6g1538 288 MobiDBLite consensus disorder prediction 146 182 - -
Tpr6g1538 288 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 2 285 - -
Tpr6g1538 288 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 2 285 - -
Tpr6g1538 288 MobiDBLite consensus disorder prediction 159 180 - -
Tpr6g1538 288 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Tpr6g1538 288 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1538 Tpr-Chr6 16664547 16665815 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1538 6 288 AP2-EREBP Transcription Factor Family AT3G57600 51.027 1.07e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr6g1538 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1538 - - gmx:100801311 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1538 6 16664547 16665815 Tpr6g1538 6 16664547 16665815 ECH