Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1533 ATGGCTGCAGTTAAGGCAAATGATGTTGTGGAGGATCGCAGCCAGCTCGATATTGGTTGGGTGAATTCTCGATGTCAAATGGAGAGAGGGTTTATTGAGTTTGCTAGAAATGGTTTTGAGCAACAGCATCAGTCTTCATCAAGAATTGAAAGAAAGAAAATGTTTCAGAATAATAATAATGTTGATGAATTTGATCAAGATCCTATGTCTTGGTCAATGCAACTGGAAAATCATTTTTGTGGTGAATTTTCTATGGCTTCCATTCAATCTAACCTAAAAATGGAAGATAAAAGTCAAGTGGAGGTGTGCAACTATGCAACTTTTGTTGGCATATACGATGGAAACAAAGGAGATTCTGCTGCTAGGTATCTCAACAATTACATCTTCAAGGATCTACTGGACCGTATTGAGAAGTATCTAAAGAGATATAATATGACAAAGGATGCTGCAAAAGAAATTATGTTACAATCTTTTTCTGAAATGGAGAAACAATTCACCGAAATAGCTGACTTTGGTTATACGTCTTGGAAAAACCCATACATGAGCGTTGTGAGCTCCGGTTGTTTGATTTGTTTGATTTGGGGACGGGAGTTGTATCTTGCCAATCTAGGAGACTCACGAGCTATACTATGTTCTAACCAGCCTGGTTCAGAATTGCTTGTTCATCCAATGCTGAGAGATCACAATTGCAGAAATGTAGAGATTCGGCAAGAACTCGAATCATTACACGGGCACGACGATACCATTTGCTCCAATGTCTTTGGGGAATGGCGCGTCAAAGGCTTAAGCGAGACAAGTAGATGTATAGGCAATGCATATTTGAAAAAAGCTGAATTTACTACAGAGAGTGGTTTTAAAGCCGCACCAGGAGAAGAGGTTACGTCAATATTCACGGAACCAGTTCTATCAGCAGAACCAGAGTTGTATACAAGAGATTTAGATGGTACTGAAAAGTTCATTATATTTGGATCTGGTGGATTTTGGAAATTATTAACAAATGAGGAGGCTGCTAAAATCGTTAATGACCATCCGCGAGAAGGAATCGCAAAGAGGCTAGCAGCTCAGGCTGTAAAAGTTGCAGCTGAAAGATGGGGCCTAGCCTATAGGGAAGTGATGCTTGCCCCTAAGGGAGTGAAAATAAGCGGAAAACCTTGTACTTCTTCCGAACTAATTAAGCCGCTTTATCATGATGATATAACTGTAATTGTTGTATATTTGGACTTAAATCTTCCTGTGACAGTAGACAGCGAGACTTACAACAGTTACCGAAGCCACTCGGATAGTGTTCTACCATCGGGTTTTGGCTATGATGTGGAAGTTGATGACCACTGGGATTATGGGAAGATTGATGATGTGTATGGTGACACATAG 1371 0.4004 MAAVKANDVVEDRSQLDIGWVNSRCQMERGFIEFARNGFEQQHQSSSRIERKKMFQNNNNVDEFDQDPMSWSMQLENHFCGEFSMASIQSNLKMEDKSQVEVCNYATFVGIYDGNKGDSAARYLNNYIFKDLLDRIEKYLKRYNMTKDAAKEIMLQSFSEMEKQFTEIADFGYTSWKNPYMSVVSSGCLICLIWGRELYLANLGDSRAILCSNQPGSELLVHPMLRDHNCRNVEIRQELESLHGHDDTICSNVFGEWRVKGLSETSRCIGNAYLKKAEFTTESGFKAAPGEEVTSIFTEPVLSAEPELYTRDLDGTEKFIIFGSGGFWKLLTNEEAAKIVNDHPREGIAKRLAAQAVKVAAERWGLAYREVMLAPKGVKISGKPCTSSELIKPLYHDDITVIVVYLDLNLPVTVDSETYNSYRSHSDSVLPSGFGYDVEVDDHWDYGKIDDVYGDT* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1533 456 Pfam Protein phosphatase 2C 106 357 IPR001932 -
Tpr6g1533 456 Gene3D - 41 410 IPR036457 -
Tpr6g1533 456 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 57 410 - -
Tpr6g1533 456 ProSiteProfiles PPM-type phosphatase domain profile. 82 406 IPR001932 -
Tpr6g1533 456 SUPERFAMILY PP2C-like 65 407 IPR036457 -
Tpr6g1533 456 CDD PP2Cc 83 406 IPR001932 -
Tpr6g1533 456 PANTHER ALPHABET, ISOFORM E-RELATED 57 410 - -
Tpr6g1533 456 SMART PP2C_4 76 404 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1533 Tpr-Chr6 16622161 16626381 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1533 69 434 PP2C-type Phosphatase Gene Family AT5G06750 38.172 2.05e-78 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1533 K01102 - pvy:116121639 254.218