Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1525 ATGTGCTGTGAGTCGGAGCGGTTAAAGTCTGCACAATCTCCGTCCATGACAAGCGATTCTCAACCAAGAAACAACGCCATGAACCATTTAACCGTTGGGACTGAAGATGCTTTTGCAAGCTTGCTTGAGCTTGCTGCTAATAATGATGTTGAAGGGTTTAAACGAATGATTGAGTATGATCCTACGTCGGTAGATGAGGTTGGATTATGGTATGGTCGTCGTAAGGGATCAAAGCAGATGGTCAATGAGGAAAGGACGCCGTTGATGGTTGCTGCTACTTATGGTAGCATTGATGTTATGAAACTGATTATTTCTCTATCTGATGTTGATATCAATAGGCCTTGTGGCCTTGACAAGAGCACCGCTCTTCACTGTGCTGCATCGGGCGGGGCTGAAAATGCTGTTGATGCTGCGAAGCTGCTTCTTGCAGCAGGGGCTGATCCCAATTCTGTCGATGCTAATGGGGATCGTCCGTTAGATGTTATTGTTTATCCCCCTAAGCTTGAATTTGTGAAAAACAGTCTTGAAGAGCTTCTTCAAACTGATGATCCTAGTACTGGTTGCAATCTTAGGGTGATCACAAACTCGTTTAATTCTTATTCTCCTCCTTTGTCAGCTTCACCTGAGAATGGGTCTCCTTCTCCTCCACCTGATCTTCTGTTGAAGTTAAAGTCAATTGATGTCCCTATTTCTCCTGCTGGATCTGAGAAGAAAGAATATCCCGTTGATCCATCCCTTCCTGATATCAAAAACAGCATATATTCAACTGATGAATTCCGAATGTATTCTTTCAAGGTCAGACCTTGTTCACGGGCTTATTCCCATGATTGGACCGAATGCCCTTTTGTTCATCCAGGGGAGAATGCCCGAAGAAGGGACCCAAGAAAGTATCATTATAGCTGTGTCCCTTGTCCTGATTTTCGCAAGGGTGCTTGCCGGCGAGGGGATATGTGTGAATACGCTCATGGTGTTTTTGAGTGTTGGCTGCATCCTGCACAATATAGAACTCGTCTCTGCAAGGACGGGATAAACTGCTCCAGAAGAGTTTGCTTCTTTGCCCACACTGCTGAAGAGCTTCGACCATTGTATGTTTCAACTGGTTCTGCGGTCCCCTCACCTCGGTCAAGTGCGTCGTCTGCTATGGATTTTGCTGCCGCCATGAGCATGTTGCCTGGCTCGCCTTCTTCGATGTCTGTCATGTCTCCTTCACCATTCACTCCACCTATGTCCCCTTCTGGCAATGGCATTTCACACAATTCTGTTCCTTGGCCCCAGCCAAACATCCCAGCCTTGCATCTTCCAGGAAGTAATCTTCAGTCCAGTCGTTTGAGATCTTCATTAAATGCTAGAGATATTCATATGGATGAATTTGAGATGTTATCTGATTATGATCAACAGCAACAGCTCCTTAATGAGTTGGCGTGCCTCTCTCCACGTCATTTGAATTCTAACGGTCTTAGTCGCTCTGGTCGAATGAAGCCACTGAATCCGTCAAATCTTGATGACCTCTTTTCTGCCGAGAGTTCTTCTCCTCGATATGCTGATCCATCACTGACTTCAACAGTTTTTTCTCCAACTCACAAATCAGCCGTCTTTAATCAGTTTCAGCAGCAGCAGAACATGTTGTCACCCGTGAATACAAATTTTTCTCCTAAAAATGTTGATCATCATTTATTGCAGGCAGCTTCTTATGGTGTTCAGCCATCAGGAAGAATGTCTCCACGAAACGTGGAACCTATCTCTCCAATGAGCTCAAGGATGTCAATGCTCGCTCAACGCGATAAGCAGCAACAGTTTCGCAGCCTAAGCTTCCGCGAGCACGGCTCTAACTCTATGCTTGCAGCTGCTGGCTCAGTCAATTCTTGGTCGAAATGGGAATCCCCCAATGGTAAATTGGATTGGGCTCACAATGCAGATGAAGTAGGCAAGCTCCGCAGATCATCTTCGTTTGAGCTTGGGAACAACGGTGAGGAGCCTGATTTATCATGGGTGCAGTCACTTGTGAAAGAATCTCCAACTGAGATTAAAGAGAAATTGGCAACTTCTATCTCAAATGCTGCGCCAACTGGATCGTCCGGTGAGGGATTGAATATGAGCGCACAAATGGAGTCCGTTGATCATGCTGTATTGGGAACATGGCTTGAACAGATGCAGCTCGATCATCTTGTGGCTCAGCAAAACTGA 2184 0.4574 MCCESERLKSAQSPSMTSDSQPRNNAMNHLTVGTEDAFASLLELAANNDVEGFKRMIEYDPTSVDEVGLWYGRRKGSKQMVNEERTPLMVAATYGSIDVMKLIISLSDVDINRPCGLDKSTALHCAASGGAENAVDAAKLLLAAGADPNSVDANGDRPLDVIVYPPKLEFVKNSLEELLQTDDPSTGCNLRVITNSFNSYSPPLSASPENGSPSPPPDLLLKLKSIDVPISPAGSEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGINCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASSAMDFAAAMSMLPGSPSSMSVMSPSPFTPPMSPSGNGISHNSVPWPQPNIPALHLPGSNLQSSRLRSSLNARDIHMDEFEMLSDYDQQQQLLNELACLSPRHLNSNGLSRSGRMKPLNPSNLDDLFSAESSSPRYADPSLTSTVFSPTHKSAVFNQFQQQQNMLSPVNTNFSPKNVDHHLLQAASYGVQPSGRMSPRNVEPISPMSSRMSMLAQRDKQQQFRSLSFREHGSNSMLAAAGSVNSWSKWESPNGKLDWAHNADEVGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKLATSISNAAPTGSSGEGLNMSAQMESVDHAVLGTWLEQMQLDHLVAQQN* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1525 727 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 27 724 - -
Tpr6g1525 727 SUPERFAMILY Ankyrin repeat 41 169 IPR036770 -
Tpr6g1525 727 MobiDBLite consensus disorder prediction 8 24 - -
Tpr6g1525 727 ProSiteProfiles Ankyrin repeat region circular profile. 118 152 - -
Tpr6g1525 727 ProSiteProfiles Zinc finger C3H1-type profile. 303 325 IPR000571 GO:0046872
Tpr6g1525 727 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 323 IPR000571 GO:0046872
Tpr6g1525 727 Gene3D - 299 361 - -
Tpr6g1525 727 Gene3D - 3 207 IPR036770 -
Tpr6g1525 727 Pfam Ankyrin repeats (3 copies) 50 152 IPR002110 GO:0005515
Tpr6g1525 727 MobiDBLite consensus disorder prediction 1 24 - -
Tpr6g1525 727 ProSiteProfiles Ankyrin repeat profile. 118 153 IPR002110 GO:0005515
Tpr6g1525 727 SMART ANK_2a 83 113 IPR002110 GO:0005515
Tpr6g1525 727 SMART ANK_2a 118 150 IPR002110 GO:0005515
Tpr6g1525 727 SMART ANK_2a 36 66 IPR002110 GO:0005515
Tpr6g1525 727 SMART c3hfinal6 333 356 IPR000571 GO:0046872
Tpr6g1525 727 SMART c3hfinal6 298 324 IPR000571 GO:0046872
Tpr6g1525 727 PANTHER UNKEMPT FAMILY MEMBER 27 724 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1525 Tpr-Chr6 16530503 16534291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1525 35 720 C2H2 Transcription Factor Family AT5G12850 53.324 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr6g1525 Ank_2 2.6e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1525 - - ccaj:109796653 1149.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1525 6 16530503 16534291 Tpr6g1525 6 16530503 16534291 ECH