Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1520 ATGGGAAATTGCTGTGTTACCCCTGCTGTAACTGGTGAAGAAATAACAAACAAGAAAAACAAAAAGGGCAAAAAAGAGAATCCATTCGCAATCGATTACGGATTCAACAACAACAACAACAACACCACATCGAAACTAACCGTTTTGAAAGATCCAACGGGTCGTGAAATCGAGAATCGTTACGAGTTAGGTAGAGAACTAGGAAGAGGTGAATTTGGTGTAACGTATTTATGTACAGATAAAGAAAGTAGAGAAGAACTAGCTTGTAAATCAATATCGAAGAAGAAACTTAGAACTGCAATTGATATTGAAGATGTTAGAAGAGAAGTTGAAATTATGAGACATATGCCACAGCATAATAATATTGTTACGTTGAAAGATACTTATGAAGATGATAATGCTGTTCATCTTGTTATGGAACTTTGTGAAGGTGGTGAACTTTTTGATCGGATTGTTGCTAGAGGTCATTATACTGAACGTGCTGCTGCTGCTGTTACCAAAACTATTGTTGAAGTTGTTCAGATGTGCCACAAACATGGTGTGATGCATAGGGATCTCAAGCCTGAGAACTTTTTGTTTGCAAATAAGAAGGAAACGGCAGCATTGAAAGCTATTGATTTTGGATTGTCAGTGTTCTTTAAACCAGGTGAAAGATTTAATGAGATAGTTGGAAGTCCATATTACATGGCTCCCGAGGTGTTGAAGAGAAATTATGGCCCAGAAGTTGATATCTGGAGCGCTGGAGTTATTCTTTACATCTTACTTTGTGGAGTCCCTCCATTTTGGGCAGAAACTGAGCAAGGAGTTGCACAAGCAATTATACGATCTGTTGTTGATTTCAAAAGGGATCCATGGCCAAAGGTTTCTGATAATGCAAAAGACCTTGTGAAGAAGATGCTCAATCCTGACCCAAAGCGGCGACTTACTGCACAAGAAGTGTTAGATCATCCATGGTTAATAAATGCAAAGAAAGCTCCGAATGTTTCTTTAGGAGAAACAGTTAGAGCAAGGCTAAAGCAGTTTTCTGTAATGAACAAGCTTAAGAAAAGAGCTTTAAGGGTTATTGCAGAGCATTTGTCGGTAGAAGAAGCTGCCGGACTAAAAGAGGGATTCAAACTTATGGATACAAGCAACAAAGGCAAGATCAACATTGATGAACTACGAGTAGGGTTGCATAAACTAGGCCATCAAATTCCTGATGCTGATGTCCAAATTCTTATGGAAGCTGGTGATGTAGATAGGGATGGATACCTAGATTACGGGGAGTATGTAGCCATTTCTGTTCATCTGAGAAAGATGGGAAATGATGAGCACCTTCATAAAGCCTTTGATTTTTTCGACCAAAACCAAAGTGGGTATATTGAGATGGACGAACTGCGGAATGCCTTATCTGATGAAATTGAAACAAACAGTGAAGAAGTCATTAATGCAATTATGCATGATGTGGACACAGATAAGGATGGAAAGATAAGTTATGAGGAATTTACGAATATGATGAAGGCTGGTACAGATTGGAGAAAGGCATCAAGACAGTATTCGCGAGAAAGATTCAACAGTCTGAGTCTGAAATTGATGAAGGACGGATCATTGCAATTAAACAATGAAAGCAATGAAGGCAGATGA 1623 0.3869 MGNCCVTPAVTGEEITNKKNKKGKKENPFAIDYGFNNNNNNTTSKLTVLKDPTGREIENRYELGRELGRGEFGVTYLCTDKESREELACKSISKKKLRTAIDIEDVRREVEIMRHMPQHNNIVTLKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTKTIVEVVQMCHKHGVMHRDLKPENFLFANKKETAALKAIDFGLSVFFKPGERFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFKRDPWPKVSDNAKDLVKKMLNPDPKRRLTAQEVLDHPWLINAKKAPNVSLGETVRARLKQFSVMNKLKKRALRVIAEHLSVEEAAGLKEGFKLMDTSNKGKINIDELRVGLHKLGHQIPDADVQILMEAGDVDRDGYLDYGEYVAISVHLRKMGNDEHLHKAFDFFDQNQSGYIEMDELRNALSDEIETNSEEVINAIMHDVDTDKDGKISYEEFTNMMKAGTDWRKASRQYSRERFNSLSLKLMKDGSLQLNNESNEGR* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1520 540 CDD STKc_CAMK 60 318 - -
Tpr6g1520 540 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
Tpr6g1520 540 Gene3D - 328 502 - -
Tpr6g1520 540 Pfam EF-hand domain pair 437 500 IPR002048 GO:0005509
Tpr6g1520 540 PANTHER SERINE/THREONINE-PROTEIN KINASE 18 516 - -
Tpr6g1520 540 Gene3D Transferase(Phosphotransferase) domain 1 147 327 - -
Tpr6g1520 540 Pfam Protein kinase domain 61 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g1520 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Tpr6g1520 540 SUPERFAMILY EF-hand 348 526 IPR011992 -
Tpr6g1520 540 ProSitePatterns Protein kinases ATP-binding region signature. 67 90 IPR017441 GO:0005524
Tpr6g1520 540 ProSitePatterns EF-hand calcium-binding domain. 411 423 IPR018247 -
Tpr6g1520 540 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Tpr6g1520 540 ProSiteProfiles EF-hand calcium-binding domain profile. 470 505 IPR002048 GO:0005509
Tpr6g1520 540 SMART serkin_6 61 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g1520 540 Gene3D Phosphorylase Kinase; domain 1 63 146 - -
Tpr6g1520 540 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE 18 516 - -
Tpr6g1520 540 ProSiteProfiles Protein kinase domain profile. 61 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g1520 540 Pfam EF-hand domain pair 379 427 IPR002048 GO:0005509
Tpr6g1520 540 CDD EFh 438 500 IPR002048 GO:0005509
Tpr6g1520 540 ProSitePatterns EF-hand calcium-binding domain. 483 495 IPR018247 -
Tpr6g1520 540 ProSiteProfiles EF-hand calcium-binding domain profile. 362 397 IPR002048 GO:0005509
Tpr6g1520 540 SUPERFAMILY Protein kinase-like (PK-like) 42 332 IPR011009 -
Tpr6g1520 540 SMART efh_1 474 502 IPR002048 GO:0005509
Tpr6g1520 540 SMART efh_1 366 394 IPR002048 GO:0005509
Tpr6g1520 540 SMART efh_1 438 466 IPR002048 GO:0005509
Tpr6g1520 540 SMART efh_1 402 430 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1520 Tpr-Chr6 16440681 16445217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1520 1 536 EF-hand Containing Proteins AT5G19450 78.399 0.0 890
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tpr6g1520 Pkinase 9.6e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1520 K13412 - gmx:100790745 947.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1520 6 16440681 16445217 Tpr6g1520 6 16440681 16445217 ECH