Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1516 ATGGGGACTCCTGAATTCCCAGATCTAGGCAAGCATTGTTCTGTTTCTGATTGCAGACAAATCGATTTCTTGCCTTTCACATGTGATCGCTGCAATCAGGTATATTGTTTGGAGCACCGAAGTTATATTAAACATCACTGTACAAAACCAAACAAAAATGATGTCACTGTTGTTATATGTCCACTTTGTGCCAAAGGGGTTCGTCTAATTCCTGATCAAGATCCAAACATAGTTTGGGATATTCATGTCAACACAGACTGTGACCCATCAAATTATGAAAAAGTCACAAAAAAGAAAAAGTGTCCTGTCCCAAGATGTAGAGAAACCTTGGTATTCTCAAACACAATCAAGTGTAGAGATTGTGAGGTAGATCATTGTTTGAAACATAGATTTGGACCTGATCACAAATGTTCTGGACCCAAAAAGTTGGAAACAAGTTTTTCATTTATGAGTCTTTTGAATAGTAGTAAAGAAGAATCAAAACCCAATTTAAATTCAACAACCACATCATCTAAATGGTCTTCAAGCTTTCTTGACTTGGCTTCTAAATTGAGTGGTGAAATTAACCAAGCATGGCGTGGAATAGGACAGAGTAGTGGCAGTGGTAATGCAAATAATCAAATGGAGAAGTGTCCATTATGTGATGCTAAGTTTTCCTCGGCGACTAGTTTGGTGAATCACGCGAAAAAAGTTCATCAAAGGAATGGTAGCAAGCGATATGGGGTAAAGAACGTATCGATCTCTGCATGTCCGAAGTGTAGTAAAGGTTTTTTGGACCCGGTTTCACTTGTGGAACATGTTGAGAGGGATCATGGTGGTAGTTCTTGA 828 0.3865 MGTPEFPDLGKHCSVSDCRQIDFLPFTCDRCNQVYCLEHRSYIKHHCTKPNKNDVTVVICPLCAKGVRLIPDQDPNIVWDIHVNTDCDPSNYEKVTKKKKCPVPRCRETLVFSNTIKCRDCEVDHCLKHRFGPDHKCSGPKKLETSFSFMSLLNSSKEESKPNLNSTTTSSKWSSSFLDLASKLSGEINQAWRGIGQSSGSGNANNQMEKCPLCDAKFSSATSLVNHAKKVHQRNGSKRYGVKNVSISACPKCSKGFLDPVSLVEHVERDHGGSS* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1516 275 SMART c2h2final6 248 271 IPR013087 -
Tpr6g1516 275 SMART c2h2final6 209 232 IPR013087 -
Tpr6g1516 275 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Tpr6g1516 275 ProSitePatterns Zinc finger C2H2 type domain signature. 250 271 IPR013087 -
Tpr6g1516 275 SUPERFAMILY beta-beta-alpha zinc fingers 210 267 IPR036236 -
Tpr6g1516 275 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Tpr6g1516 275 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Tpr6g1516 275 Gene3D - 86 171 IPR035896 -
Tpr6g1516 275 Gene3D - 2 60 IPR035896 -
Tpr6g1516 275 Gene3D Classic Zinc Finger 190 275 - -
Tpr6g1516 275 Pfam C2H2-type zinc finger 210 232 - -
Tpr6g1516 275 ProSitePatterns Zinc finger C2H2 type domain signature. 211 232 IPR013087 -
Tpr6g1516 275 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 275 - -
Tpr6g1516 275 SUPERFAMILY AN1-like Zinc finger 6 52 IPR035896 -
Tpr6g1516 275 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 275 - -
Tpr6g1516 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 209 237 IPR013087 -
Tpr6g1516 275 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Tpr6g1516 275 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Tpr6g1516 275 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Tpr6g1516 275 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Tpr6g1516 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 248 275 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1516 Tpr-Chr6 16397147 16399605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1516 1 275 C2H2 Transcription Factor Family AT2G41835 61.484 7.68e-115 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr6g1516 zf-AN1 9.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1516 - - gmx:100806459 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1516 6 16397147 16399605 Tpr6g1516 6 16397147 16399605 ECH