Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1490 ATGGAAGGAGTAGTGATTAGTGAGAAGGGATTGTTGGAATGTGGAAGAAAGTGCACTCCATCACCTTTCTTGTTGAAGACATATATGTTGGTGGAGGATCTGGCCACCGATGATGTGATATCATGGAACGAAGAAGGAACGGCGTTCGTGGTGTGGCAACCGGCGGAATTTGCTCGTGATCTTCTGCCAACACTCTTCAAGCATAGCAATTTCTCTAGCTTTGTACGCCAGCTCAATACCTATGGGTTTCGTAAAGTTGCAACAAATAGATGGGAATTTTGCAACGAAAAGTTCAAGAAAGGTGAAAGAGAATTGCTATCCGAGATTCGGCGAAGAAGAGCTTGGAACAACAACAAGCAACATCACACCGTACAAAACCAAGATTCTGATGAAGATCAAAGGTCATCATCAACCTCATCATCGTCCGGTTATATTAATCTGGTGGATGAAAATAAGCGACTGAAGAAGGAGAATGCGGTGTTGAATTCTGAACTAACAAGCATGAAATGGAAGTGTAAGGAGCTAGTTGATTTGGTTTCAATTTATAACCAAAAAAAGGAAGAGGATGAAGCTAATGAGAATGATAAAAGGCCAATGCTGTTTGGAGTGAGACTAGATGTTCAACAAGGAGATAGAAGGATAAAGAGGAATAGAGCTGAGATTGGTGAAAACGCAAGTATTTTGTTGTCTCAATCATGCAAATAG 705 0.4099 MEGVVISEKGLLECGRKCTPSPFLLKTYMLVEDLATDDVISWNEEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATNRWEFCNEKFKKGERELLSEIRRRRAWNNNKQHHTVQNQDSDEDQRSSSTSSSSGYINLVDENKRLKKENAVLNSELTSMKWKCKELVDLVSIYNQKKEEDEANENDKRPMLFGVRLDVQQGDRRIKRNRAEIGENASILLSQSCK* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1490 234 SMART hsfneu3 19 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr6g1490 234 ProSitePatterns HSF-type DNA-binding domain signature. 62 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr6g1490 234 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 234 IPR027725 -
Tpr6g1490 234 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-3 6 234 - -
Tpr6g1490 234 MobiDBLite consensus disorder prediction 116 142 - -
Tpr6g1490 234 PRINTS Heat shock factor (HSF) domain signature 23 46 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr6g1490 234 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr6g1490 234 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr6g1490 234 Pfam HSF-type DNA-binding 23 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr6g1490 234 Coils Coil 144 171 - -
Tpr6g1490 234 SUPERFAMILY "Winged helix" DNA-binding domain 20 112 IPR036390 -
Tpr6g1490 234 Gene3D - 15 113 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1490 Tpr-Chr6 16078514 16081575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1490 20 182 HSF AT2G41690 62.222 1.29e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Tpr6g1490 HSF_DNA-bind 2.5e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1490 K09419 - gmx:100802739 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1490 6 16078514 16081575 Tpr6g1490 6 16078514 16081575 ECH