Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1486 ATGGAGTTAAAGTTAAAGATGGATGATGAGAAGAGGGGATCGCTATGTCTGGTTTGGGAAGATTTGACAATGTACGTAGCAACAAATCCTAGCAGCAATGTTGGACCAAAAAGAAAAGTACTGATAAATGGTTCAAGTGGTTATGCAGAGTCCAACAGAATTATGGCAATCATTGGTCCTTCAGGATCTGGCAAATCCACTTTACTTCATGCACTCGCAGGAATACTTCCCACCAATGTTAGCATGACTGGAAATGTACTAATCAATGGGGCTAAGAAAAGTAGAGCAGGCTGCAGGGATATTTCATACCTTGCTCAAGAAGATTGTTTCTTAGGAACTCTAACAGTGAGAGAAACCCTCACATACTCTGCACATTTGAGACTTCCTGCAAACATGACCAAATTTGAAATTGATAATGTGGTAACAAAAACAATAGCTGAAATGGGTTTGGAAGACATTGAAGATAGTAGAATTGGGAATTGGCATTTGAGAGGCATAAGTAATGGAGAGAAAAGAAGACTTAGCATAGGAATTGAGCTATTAACACAACCTCAAATAATGTTTCTTGATGAACCAACTAGTGGATTGGACAGTGCAGCTGCTTTCTATGTTGTTTCATCTCTTAGAAGAATAGCTCATGATGGAAGAATTGTTATCTTTTCTATTCATCAACCAAGTGATGAAGTTTTCAATCTCTTTGATGATCTCATTATTCTTGCAGGAGGTGAAACTGTTTATTTTGGAGAAATCACCATGGCACTAAAGTTCTTTGCTGATGCAGGGTTTCCTTGTCCAACAAGAAAAAACCCTCCCGAGCACTTCCTTCGCTGTGTTCGCCCAGAGTTTGATAGTGTTGCAACCTTTATACAATCTAAAAATGAAGCCTCGTCATCATGGAATTCCCAAATTAATATGACAACAGAAAAGATTAAATTTAAGCTTCTACAGAACTACAAGAACTCCATGCATTCAGCAAATACAAAGAAAAAAATAAGACAAATCAAATTAAGGGAAGAAATTTTCATTGGAAGGACACATACAAGTAGGTTGAAGCAATTATGCATACTGACAAGTAGATCATTCCTAAATATGATCAGAGACATTGGTTACTACTGGTTGCGAATTTTATTCTTTATCTTGGCATCAGTAAATGCTGGTTATATTTATTACAACATAGGATCAAGTAATGCAGCAATCTTATCAAAAGGCAAGTTTTATGGATTTGTCTATGGCTTCATGATTTTCATCTGTGTAGGAGCCTTACCCTTTTACCTCGAGGAATTGAAGGTCTTCAAACGTGAAAGATTTGGGAGGCATTATGGGGAGGACATGTATGTACTGTCACATTTCCTCTCATCATTACCTTTTGTCCTTGCAACTTCACTCTCTTCAGGAACAATACTTTTCTATATGGTGAAATTTCATGAAGGATTCTCTCATTACTGCTATTTTAGCATGAACCTGTTCTTATGCATTTCTGTGGCAGAAGGCTGCATGTTATTTGTTGCAGCACTTGTGTCCAATCAATTAGTAACCATAGTAACAGCTGCTGGTGTAACTGTATTTATGTTGATGCCATCTAGTATATTCAGAAGGCTAACTGACCTTCCAAAATTCTTCTGGCGCTACCCGATGTCTTACATTAGCTACATTGCATGGTCAGTACAGGGGCAGTTGAAGAATGACATGATTGGACTAGAATTTGAACCACTAGTGGCAGGGGATGCTAAGCTAAAGGGAGAAGTGATGCTTCAAGATACATTTGGAATTCAAACAGATTATTCAAAATGGTGGGACTTAGCAGCTCTTGTCTTCTTATTAATATCTTATAGATTTCTGTTTTTCTTGGCTCTTAAGCACAAGGAGAGAGCTTCTTCACTATTACAAACCACAAGGGCTTACTTGGACATTTTACTCACAAGAACCCCTTTGAAGGACACCAATGTTTCTTCTAGGAGACACCAACCCCTCTATCCTTTGTCAGCTCAGGAGGGTCTTTCCTCTCCCATGTCTTAG 2016 0.3829 MELKLKMDDEKRGSLCLVWEDLTMYVATNPSSNVGPKRKVLINGSSGYAESNRIMAIIGPSGSGKSTLLHALAGILPTNVSMTGNVLINGAKKSRAGCRDISYLAQEDCFLGTLTVRETLTYSAHLRLPANMTKFEIDNVVTKTIAEMGLEDIEDSRIGNWHLRGISNGEKRRLSIGIELLTQPQIMFLDEPTSGLDSAAAFYVVSSLRRIAHDGRIVIFSIHQPSDEVFNLFDDLIILAGGETVYFGEITMALKFFADAGFPCPTRKNPPEHFLRCVRPEFDSVATFIQSKNEASSSWNSQINMTTEKIKFKLLQNYKNSMHSANTKKKIRQIKLREEIFIGRTHTSRLKQLCILTSRSFLNMIRDIGYYWLRILFFILASVNAGYIYYNIGSSNAAILSKGKFYGFVYGFMIFICVGALPFYLEELKVFKRERFGRHYGEDMYVLSHFLSSLPFVLATSLSSGTILFYMVKFHEGFSHYCYFSMNLFLCISVAEGCMLFVAALVSNQLVTIVTAAGVTVFMLMPSSIFRRLTDLPKFFWRYPMSYISYIAWSVQGQLKNDMIGLEFEPLVAGDAKLKGEVMLQDTFGIQTDYSKWWDLAALVFLLISYRFLFFLALKHKERASSLLQTTRAYLDILLTRTPLKDTNVSSRRHQPLYPLSAQEGLSSPMS* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1486 671 Pfam ABC-2 type transporter 223 276 IPR043926 GO:0140359
Tpr6g1486 671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 255 IPR027417 -
Tpr6g1486 671 Pfam ABC-2 type transporter 352 561 IPR013525 GO:0016020|GO:0140359
Tpr6g1486 671 PANTHER CASSETTE TRANSPORTER, PUTATIVE-RELATED 16 629 - -
Tpr6g1486 671 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 16 629 - -
Tpr6g1486 671 Pfam ABC transporter 49 194 IPR003439 GO:0005524
Tpr6g1486 671 Gene3D - 7 260 IPR027417 -
Tpr6g1486 671 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 17 266 IPR003439 GO:0005524
Tpr6g1486 671 SMART AAA_5 51 251 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1486 Tpr-Chr6 16042719 16052838 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1486 49 235 Calmodulin-binding Proteins AT2G36910 28.426 1.35e-10 62.8