Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1445 ATGTGCTCACTTTTAAGGACAGAGTCTGAGGAAATTCGCTTTTCAGGGATATGGGGTATGGGCGGCATAGGAAAGACAACTCTAGCCAAACTTGTCTACAATAAAATCCATCACCAATTTGATTTTAGTTGCTTTCTTGAGAATGTTAGAGAGATTTCTAGTGAAATAGATGGTCTGCTTTGTTTACAAAGAAAATTGCTTTCTCATCTAAAATTAAGCAGCATGAGAATTGAAAGTTTGGACCAAGGAAGGGAGACAATACGTAATCTTTTATTCAATAAAAAAGTTCTCCTTGTCCTTGATGACCTAAGTTCTGATATCCAACTAGAGAATTTAGCTGGAAAGCAAGAATGGTTTGGTCCAAGGAGCAGGATAATAATAACTACTAGAGACAAGCATCTCCTAGCATCACTAGGCGTGTGTAAAAGTTATGATGCTCAAATCTTAAACAGTGATGAATCCCTTCAACTTTTTTGTCAAAAAGCTTTTAGAAGAGGAATACCTGAAGAAGGTTTCATAGAGTTGTCAAAACTGGTGGTTCAATGCGCTGGAGGTATTCCCTTGGCACTCAAAGTGTTGGGTTCATTCCTCTGTGGAAGGAGGGCGTCTGTATGGGAAGACGCTTTGAAAATGTTGCAGCAGGATCTTCAAAATGATATTTACAAGACATTGAGAATAAGTTATGATGGATTAAGGGACATGGAAAAGGCGATATTTCTAGATATTGCTTGTTTTTTCAAAGGGAGCCTCAAAGATCATGTAACACAAATATTGAAAAATTGCGGTCTTAATCCATTGATCGGTATAGACGTTCTTATTGAAAAATCATTAATAACTTATGATGGGTGGAATTTGGGGATGCATGATTTGCTTCAAGAAATGGGTAGAAATATTGTTCTCCATGAATCTCTTAATGATGCCGGCAAGCGGAGTAGGTTGTGGTTTCTCAAAGACATTGATCAAGTATTGAGAAATAATAAGGGAACTGAATCCACTCAAGCTATAGTTCTCAATCTGCCTGAAGCATTTGATGCAAGTTGGAACCCTGAAGCTTTTGCAAAGATGGGTAATCTTAGATTGCTCATGATATTAAATAAATTGCAACTTCCACTTGGTCTCAAATGTCTTCCCAGTGGGTTAAAAGTTCTTGAATGGAGGGAATGTCCGCTCGTGTCATTGCCAGTTGGAGACCAATCGGACGAACTTGTTGACCTTAATATGTGTGATAGCAAAATAAAGTACCTTTGGAGAGGAACAAAGCTTCTTGGAAATTTGAAGATCATCAATTTGAGAAATTCCAAATATCTGCATCAAACTCCAGACTTCACTGGAATTCCAAATCTTGAAAATTTGGATCTTGAAGGCTGCATAAACCTAGTTGAGGTTCATGCTTCTCTTGGACTTCTTAAAAAGATTTCATATGTGACATTAGAAGATTGCAAAAGTCTTAAAAGCCTTCCGAGAAAATTGGAAATGAATTCTTTGGAGCGTCTCATTCTATCAGGCTGCACAGCAGTTAGAAAGCTTCCTGATTTCGGGGAAAGTATGACAAATCTATCCACACTTGCTTTGGATGAGATTCCCATAGCTGAACTACCTCCAACTATTGGTTACTTGACAGGTCTTAATAGCTTGCGTTTACGGGAATGTAGAAATATTGCTTCCCTTCCAAATACATTTTCTAATTTGAAATCTCTCAAAAGGCTCAATTTATCTGGTTGCTCAAAATTTTACAAGCTTCCTGATAATTTGCATGAAAATGAGGCTTTGGAGTATCTTAATGTGAGTGACACTGCTATAAGAGAAGTTCCTTCATCCATTGTTCATTTGAAAAATCTTGTATTACTTTCATTTCATGGATGCAAAGGACTATCATGGAACTCAGAGAGCAAACACTTCTCTTTGGGTAAGCTTTTCAGGTTTGGTACTGATCCAATTCCCAAGAAATTAGTCTTGCCTTCTTTTTCTGGTCTATCCTCATTGAAGAAACTAGACTTAAGCTATTGCAATCTCCATGATGGATCAATTCCTGATGATCTTGGCTGTTTATCATCATTGGTAACATTAGATATAAGTGGGAACAATTTTGTGAACCTTCATGATGGCTGCATATCTAAACTTTTGAAGCTAGAAAGACTTGTGTTGAGTAGTTGCCAAAACCTGCAGTCATTGCCTAAGCTACCGCCAAATGTACATGTTGTTAATGCAAGTGATTGTGGTTCAATGAAACCCTTACCAAATCCACAAGAGATATGGAGTCACTTGTCATCTTTTGCTTTTGATAAGTTGCAAGATGAAAATCCGATCAAAACTTTATTGGTAAGTCCTGGAAATGAAATTCCATCAACTTTTTTCTATCAAAATTATTTTAATCGGGACATTCAATATTTAAAAGATAACTACATATGGGCTGATTCTACTGCGTCAATATCGATAGACATAGCTCAACTTCGTCAACGGTATGATAGAAGTGAATGGTGGGGAATTTTGGTTTGCCTTGTCATAGAAGATGTGGTGTCTTCTAAACCTTCCGAGGACTATCGTGTTGGTTGGTTTTCAAAATTTCCTGCTACCAGTAATATTTTGCGTCAGCTATGTCAAAAGTTGTATGAGCATGGTTTCATTTCTGGAGTACCAAATTCCAAGCATCCTCACCTATTGGTTTTGTATATTCCTGGTCCTTCATCCCGTTGGTTTTATGTTCAAGACAAGTTTGAGTTGATATTTTACAGTTCTAGTCTTAAGAGTAAGTTAGTTATAAATAAATGTGGGTGGCGCATATTATGTAAGGAAGATTCTCAACTCATGCGCAAAAAACTGTCTGAATGCAACACTTCTTCTGCCAACCAATGTGTTTCACGAGGCAATTGCTTATCTTCTTCTCCTCCTTCTTCTTTTACATCATCATGGAGATGGATAAGCTGTCTCAAGGTTCCCCGATGTTTCAAACCTTTCCTGTTGAATGTCCTATGTGAACGCTTGCGTACTATTGCTAAGTGCAGGTTCTGTAGCATGGAAGGGATTGCCACTATCCATGTTTTAAGAGACTGTAGGCGAGCTCATGCAATTTGGGTTCAAATGGTTCCTCCTCAAGTGCATGATGAGTTTTTTTCAATTTCTCTTCATGATTGGATGCATAGGTTCCTTCGTAAGTCCTGGTTGCCAAATAACTGTGAAGCATATGATGCTGACTGCTTGAGGTTTTCTGTCACTACTTTTCTGCTCTGGAAGGACGAAGAAAATTCCATCCCCGAGGGAGATTCTTTAACAGATAATGGATTGTATTCTTTGATCAAGTCTCTAGTACAAGTACACACCTCATCTACCAGACATTTTATTAAGTTGAATGTGGATGGTTGTTGCATGGACAATCCTAGAAATGCCGGTTATGGGGGTCTTTTTCGTGATGTAGAGGGGAATTGGCTTGGTGGATTCTATGGCTCTCTGGGCTTTACAACTAATATAAAAGCTGAGCTTTATGCCATTTGTCAAGGTTTGGTCACAGCTTGGGATTTGGGTTACAGAAATATATTAGTTGAAAGTGATTCCATGGAAGCTATCAATTACATTGAGGAGGCCAATATTGAGCATGATGTCTATGGTAGCTTGGTGTCTGACATACGCTCCCTCAAGCAAAGAAATTGGTCCCTAAATTTGGTCCATTCTGTCAAGGAAGATAATGCTTGTGCAGATATTTTATCAAAACTTGGAGCTGAGCAGCATGAGGTCTATTGCTTCCATGCTTCTCCACCACAACAGCTTCGGTGGCCATTGGTGGCCGATGCCCTCCATGTTCAGCTTCCATGCATGTAG 3813 0.3858 MCSLLRTESEEIRFSGIWGMGGIGKTTLAKLVYNKIHHQFDFSCFLENVREISSEIDGLLCLQRKLLSHLKLSSMRIESLDQGRETIRNLLFNKKVLLVLDDLSSDIQLENLAGKQEWFGPRSRIIITTRDKHLLASLGVCKSYDAQILNSDESLQLFCQKAFRRGIPEEGFIELSKLVVQCAGGIPLALKVLGSFLCGRRASVWEDALKMLQQDLQNDIYKTLRISYDGLRDMEKAIFLDIACFFKGSLKDHVTQILKNCGLNPLIGIDVLIEKSLITYDGWNLGMHDLLQEMGRNIVLHESLNDAGKRSRLWFLKDIDQVLRNNKGTESTQAIVLNLPEAFDASWNPEAFAKMGNLRLLMILNKLQLPLGLKCLPSGLKVLEWRECPLVSLPVGDQSDELVDLNMCDSKIKYLWRGTKLLGNLKIINLRNSKYLHQTPDFTGIPNLENLDLEGCINLVEVHASLGLLKKISYVTLEDCKSLKSLPRKLEMNSLERLILSGCTAVRKLPDFGESMTNLSTLALDEIPIAELPPTIGYLTGLNSLRLRECRNIASLPNTFSNLKSLKRLNLSGCSKFYKLPDNLHENEALEYLNVSDTAIREVPSSIVHLKNLVLLSFHGCKGLSWNSESKHFSLGKLFRFGTDPIPKKLVLPSFSGLSSLKKLDLSYCNLHDGSIPDDLGCLSSLVTLDISGNNFVNLHDGCISKLLKLERLVLSSCQNLQSLPKLPPNVHVVNASDCGSMKPLPNPQEIWSHLSSFAFDKLQDENPIKTLLVSPGNEIPSTFFYQNYFNRDIQYLKDNYIWADSTASISIDIAQLRQRYDRSEWWGILVCLVIEDVVSSKPSEDYRVGWFSKFPATSNILRQLCQKLYEHGFISGVPNSKHPHLLVLYIPGPSSRWFYVQDKFELIFYSSSLKSKLVINKCGWRILCKEDSQLMRKKLSECNTSSANQCVSRGNCLSSSPPSSFTSSWRWISCLKVPRCFKPFLLNVLCERLRTIAKCRFCSMEGIATIHVLRDCRRAHAIWVQMVPPQVHDEFFSISLHDWMHRFLRKSWLPNNCEAYDADCLRFSVTTFLLWKDEENSIPEGDSLTDNGLYSLIKSLVQVHTSSTRHFIKLNVDGCCMDNPRNAGYGGLFRDVEGNWLGGFYGSLGFTTNIKAELYAICQGLVTAWDLGYRNILVESDSMEAINYIEEANIEHDVYGSLVSDIRSLKQRNWSLNLVHSVKEDNACADILSKLGAEQHEVYCFHASPPQQLRWPLVADALHVQLPCM* 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1445 1270 Pfam NB-ARC domain 7 232 IPR002182 GO:0043531
Tpr6g1445 1270 Gene3D - 148 232 IPR042197 -
Tpr6g1445 1270 Pfam Reverse transcriptase-like 1116 1235 IPR002156 GO:0003676|GO:0004523
Tpr6g1445 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 242 IPR027417 -
Tpr6g1445 1270 SUPERFAMILY Ribonuclease H-like 1111 1241 IPR012337 -
Tpr6g1445 1270 Gene3D - 1 141 IPR027417 -
Tpr6g1445 1270 ProSiteProfiles RNase H type-1 domain profile. 1109 1239 IPR002156 GO:0003676|GO:0004523
Tpr6g1445 1270 SUPERFAMILY L domain-like 651 758 - -
Tpr6g1445 1270 Pfam Leucine Rich Repeat 402 420 IPR011713 -
Tpr6g1445 1270 SUPERFAMILY L domain-like 288 628 - -
Tpr6g1445 1270 Gene3D Ribonuclease Inhibitor 514 630 IPR032675 -
Tpr6g1445 1270 CDD RNase_H_like 1115 1235 IPR044730 -
Tpr6g1445 1270 Gene3D - 1112 1240 IPR036397 GO:0003676
Tpr6g1445 1270 Gene3D Ribonuclease Inhibitor 645 814 IPR032675 -
Tpr6g1445 1270 Gene3D Ribonuclease Inhibitor 323 513 IPR032675 -
Tpr6g1445 1270 PRINTS Disease resistance protein signature 14 29 - -
Tpr6g1445 1270 PRINTS Disease resistance protein signature 90 104 - -
Tpr6g1445 1270 PRINTS Disease resistance protein signature 183 197 - -
Tpr6g1445 1270 PRINTS Disease resistance protein signature 561 577 - -
Tpr6g1445 1270 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 7 509 - -
Tpr6g1445 1270 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 508 762 - -
Tpr6g1445 1270 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 508 762 IPR044974 GO:0006952
Tpr6g1445 1270 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 509 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1445 Tpr-Chr6 15585574 15590278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1445 3 618 WRKY Transcription Factor Family AT4G12020 34.858 4.93e-85 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1445 - - var:108321227 1766.9