Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1423 ATGGTTGCTTTCTGTTCTCCTCAATTCTCGTACTCAAACATGGGATGGTTCTTAGAAGAGTTAGAGCCAGAGTCCTTATTAATTAGCCATAAGCAAAAAAACTATGTATCATTAGAATACTCATTACCGCATAATGAATTCTCTTCACCAATTAAGCAAGATGTTGAGGATATTGAAAGGTCACAATCCCCTAAGCTTATGGTTAAGAAGCTTAATCACAATGCTAGTGAACGTGATCGTCGCAAGAAGGTCAATAACTTGATTTCTTCACTTCGTTCACTTCTTCCCGGTGAAGATCAAACGAAAAAAATGAGCATTCCAGTAACAATTTCAAGAGTATTAAAATACATACCGGAATTACAAAAGCAAGTGGAAGGATTAATTAAGAAAAAAGAAGATTTTCTATCAAGAATTTCTAGGCAAGAATATGCAGTGAACAAAGAATCATCACAAAAGAAAATTCCAATTTACAATTCTTCTTTTATAGTTTCAACAAGTAGGCTTAATGATATTGAGCTAGCTATTCATATTTCATCTTATGAGTCTAACAAGATTCCATTATCTGAGATCTTGATGTGTTTAGAAGATAATGGACTTTTTCTACTAAATTCTTCATCTTCCAAAACCTTTGGAGGAAGACTCTTCTATAACTTGCATTTTCAGGTGGAGAAAACTCAAAGATTAGAGTGTGATGCTCTAATTCAAAAACTTTTGTCAATATGTGAGAAACAACGAAGTAATCAATATTGA 750 0.3307 MVAFCSPQFSYSNMGWFLEELEPESLLISHKQKNYVSLEYSLPHNEFSSPIKQDVEDIERSQSPKLMVKKLNHNASERDRRKKVNNLISSLRSLLPGEDQTKKMSIPVTISRVLKYIPELQKQVEGLIKKKEDFLSRISRQEYAVNKESSQKKIPIYNSSFIVSTSRLNDIELAIHISSYESNKIPLSEILMCLEDNGLFLLNSSSSKTFGGRLFYNLHFQVEKTQRLECDALIQKLLSICEKQRSNQY* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1423 249 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 243 IPR015660 GO:0003700|GO:0006357
Tpr6g1423 249 CDD bHLH_AtORG2_like 69 141 - -
Tpr6g1423 249 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 243 - -
Tpr6g1423 249 SMART finulus 74 126 IPR011598 GO:0046983
Tpr6g1423 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 120 IPR011598 GO:0046983
Tpr6g1423 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 138 IPR036638 GO:0046983
Tpr6g1423 249 Pfam Helix-loop-helix DNA-binding domain 69 121 IPR011598 GO:0046983
Tpr6g1423 249 Gene3D - 60 152 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1423 Tpr-Chr6 15348021 15350545 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1423 13 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 42.553 4.98e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr6g1423 HLH 7.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1423 - - gmx:100803424 275.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1423 6 15348021 15350545 Tpr6g1423 6 15348021 15350545 ECH