Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1400 ATGGTCGTTAATAGATTGAAGAGGGAGCAATGTGACCGAACAAAGCATGATTCTAGTTTCTCTCGCTGGAAGATTCTTATTGGTCCTTCTGATTGGGAAGACCATTCCAAAGGAAATGAAGGATCTGCCAGATACAGGATTCACAACCTTCCTCAGAAATTGTGTCCGGGAGTGTACGAGCTTGGTGTAGCTGTGTCACATAATGGTTTGGGGAGACAAATTTACAAGCTTACCACTGACCCTCGCCGCGTAGTTGTGGTTTACCTTGGTAAAGCTGACAATGTGAGAGCAAGACTCCAGCGTTATGGAAGGACTGGAGCTCATTTGAGTAATATCTGTTCATCGGATGATTCATCTCTTCAGACCGGAAGGTCATTGTTTCAGGAGATATTTTCGCAAGGCTTCCCAATTGTTTATAGATGGGCTCCTATGCAAAACGAGGGAGATGCCCTAAGAACAGAAGCTCAGCTGCTTAGTACATTTGATTATGCATGGAACACAATCAGTAATGGTACACGGCGGCCTGATGATATTCTTCAAATGCTCAACAAACTTGCTTCAGGCACTAGAACATTTTCAGATGTGACTAAATTGCTTCTTCCCTTCACTCAGAGGAAAGTGGGGATACCAATTAAATCGAGTAAACTGCCTCTGACAGATGACAAATTAGATGAAGCTGACAATGGTAGCTATAATATCCTCTCCCGTGTGTTCAAATTCAACAGGTCACGTCCTAGGATAGTTCAGGATACCACTAGTAGGGCCATTCATGAGAATGCAAAAATTTGCGGAGTAATATTGGCTGACGGTTCTATTTGTCAGAGGCCACCAGTTGAAAAAAGAGTGAGGTGTGCTGAACACAAAGGAATGAGGATAAAGGTGTCCACTGCCAAAGCAATCAGAGCACCCAAGTTAGAATTAGAAACTATTGTAGGTAATGCCTATAGGTACCAAAATGTTAGCCAAGATGTAGAAGAGCCTCCACAAAGAAAGGTCGAGAGTCATGTTCAGGAGAGTTTCACCAAAACCCTTATATGCGGAATCATCTTGGATGATGGATCTACTTGTACAAGACAACCAGTTAAAGGAAGAAAAAGGTGCCATGAGCATAAAGGGGAGAGAATACGTGGAAACCAGAAATAA 1143 0.4278 MVVNRLKREQCDRTKHDSSFSRWKILIGPSDWEDHSKGNEGSARYRIHNLPQKLCPGVYELGVAVSHNGLGRQIYKLTTDPRRVVVVYLGKADNVRARLQRYGRTGAHLSNICSSDDSSLQTGRSLFQEIFSQGFPIVYRWAPMQNEGDALRTEAQLLSTFDYAWNTISNGTRRPDDILQMLNKLASGTRTFSDVTKLLLPFTQRKVGIPIKSSKLPLTDDKLDEADNGSYNILSRVFKFNRSRPRIVQDTTSRAIHENAKICGVILADGSICQRPPVEKRVRCAEHKGMRIKVSTAKAIRAPKLELETIVGNAYRYQNVSQDVEEPPQRKVESHVQESFTKTLICGIILDDGSTCTRQPVKGRKRCHEHKGERIRGNQK* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1400 380 SMART uri_9 74 171 IPR000305 -
Tpr6g1400 380 Pfam GIY-YIG domain-containing protein 20 179 - -
Tpr6g1400 380 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 325 379 - -
Tpr6g1400 380 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 2 302 - -
Tpr6g1400 380 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 325 379 IPR038909 GO:0003677|GO:0006355
Tpr6g1400 380 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 2 302 IPR038909 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1400 Tpr-Chr6 15110697 15113865 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1400 1 375 HRT Transcription Factor Family AT5G56780 41.969 5.30e-92 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Tpr6g1400 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1400 - - lang:109350609 479.174