Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1398 ATGTCCCTTGAAGACTCACTAAGATCTCTTTCTTTAGATTACTTAAACCTTCTCATCAACGGACAAGCCTTCAGCGACGTCGTTTTTAGCGTCGAAGGTCGATTAGTTCATGCTCATAGATGCATCTTAGCTGCAAGAAGTTTATTCTTCAGAAAATTCTTTTGTGGGCCAGACCCACCTTCTGGTCTTGACCCATCAGGAAACCGAGTTAACTCATCATCAACACGCTCTGGTGTTATTCCTGTTAACTCTGTTGGATATGAAGTTTTCTTGTTGATGCTTCAGTTTCTTTATAGTGGTCAAGTTTCTATTGTTCCTCAGAAACATGAACCTAGGCCTAATTGTGGTGACCGTGGTTGTTGGCATACACATTGTACCTCAGCTGTTGATCTTGCTCTTGATACTCTTGCTGCTGCTCGATACTTCGGCGTCGAACAGCTTGCATTACTCACACAGAAACAACTAGCAAGCATGGTGGAAAAAGCTTCCATTGAAGATGTAATGAAAGTGCTACTAGCATCAAGAAAACAAGACATGCACCAACTATGGACCACATGTTCCCACCTCGTAGCAAAGTCAGGTCTTCCACCAGAAGTTCTAGCAAAACACCTCCCTATTGACATTATAGCCAAAATCGAAGAGCTTCGAATCAAATCATCCTTAACACGCCGCTCCTTAATCCCTCACCACCATCATCACCCTCACCACCATGACCACCTCTCCGCAGCAGCCGACCTAGAAGACCAAAAAATCCGTCGAATGAGACGTGCCCTCGATTCCTCAGACGTCGAGCTAGTAAAACTAATGGTAATGGGAGAAGGTCTTAACCTTGACGAAGCATTAGCATTACCTTATGCTGTTGAGAATTGTAGTAGAGAAGTTGTGAAAGCCTTATTAGAACTCGGTGCAGCCGATGTTAACTTCCCTGCTGGTCCAACCGGTAAAACCCCGCTTCACCTCGCAGCCGAGATGGTCTCACCAGACATGGTGGCAGTATTACTCGACCACCACGCCGATCCAAATGTAAGAACGGTCGACGGTGTTACACCTTTGGACATTTTAAGAACCCTAACTTCAGATTTTCTATTCAAAGGTGCTGTCCCTGGATTAACTCACATAGAACCAAACAAACTAAGGTTATGTTTGGAACTTGTTCAATCTGCAGCTCTTGTTATGTCAAGAGAAGAAGGGAATAGTAATGCTAACAATACATCTTCTTCAGCAACAAACATGTATCCTCATAATATGAATGAAGAACATCATCATCAACATAGCCACAACAGCAACAATAACATGGTGTATCTTAACCTTGGTGCTACTACTCAAATGAATTCAAGATTGGATTCTGGTGATGATGATAGCAATCATAATAATCAAAGGGAAAGTATCAACCACTCCATGTATCATCATCATCATTCTCATGACTACTAA 1431 0.4263 MSLEDSLRSLSLDYLNLLINGQAFSDVVFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPSGNRVNSSSTRSGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEPRPNCGDRGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDIIAKIEELRIKSSLTRRSLIPHHHHHPHHHDHLSAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVENCSREVVKALLELGAADVNFPAGPTGKTPLHLAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSREEGNSNANNTSSSATNMYPHNMNEEHHHQHSHNSNNNMVYLNLGATTQMNSRLDSGDDDSNHNNQRESINHSMYHHHHSHDY* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1398 476 SUPERFAMILY Ankyrin repeat 272 356 IPR036770 -
Tpr6g1398 476 ProSiteProfiles BTB domain profile. 25 106 IPR000210 GO:0005515
Tpr6g1398 476 Pfam BTB/POZ domain 16 108 IPR000210 GO:0005515
Tpr6g1398 476 MobiDBLite consensus disorder prediction 395 414 - -
Tpr6g1398 476 Gene3D Potassium Channel Kv1.1; Chain A 4 192 IPR011333 -
Tpr6g1398 476 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 472 IPR044284 GO:0099402
Tpr6g1398 476 Pfam Domain of unknown function (DUF3420) 194 255 IPR024228 -
Tpr6g1398 476 Pfam Ankyrin repeats (3 copies) 261 343 IPR002110 GO:0005515
Tpr6g1398 476 ProSiteProfiles Ankyrin repeat profile. 313 345 IPR002110 GO:0005515
Tpr6g1398 476 MobiDBLite consensus disorder prediction 395 430 - -
Tpr6g1398 476 ProSiteProfiles Ankyrin repeat region circular profile. 313 343 - -
Tpr6g1398 476 CDD BTB_POZ_NPR_plant 8 159 - -
Tpr6g1398 476 Gene3D - 240 361 IPR036770 -
Tpr6g1398 476 PANTHER REGULATORY PROTEIN NPR5 1 472 - -
Tpr6g1398 476 SMART BTB_4 25 159 IPR000210 GO:0005515
Tpr6g1398 476 MobiDBLite consensus disorder prediction 443 476 - -
Tpr6g1398 476 SMART ANK_2a 278 308 IPR002110 GO:0005515
Tpr6g1398 476 SMART ANK_2a 313 342 IPR002110 GO:0005515
Tpr6g1398 476 MobiDBLite consensus disorder prediction 449 476 - -
Tpr6g1398 476 SUPERFAMILY POZ domain 8 157 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1398 Tpr-Chr6 15064629 15068749 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Tpr6g1398 BTB 9e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1398 K14508 - pvy:116125712 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1398 6 15064629 15068749 Tpr6g1398 6 15064629 15068749 ECH