Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1389 ATGACAATGGCAGCCCCAGGGCACCTCAACGTCACTGAATCTCCTTCCCGTGGATCCCGCAGCGTTGATTGTTTCCACAAATTGGAGCAAATCGGCGAAGGAACCTATGGTCAGGTTTACATGGCCCGAGAGATCGAAACCGGTGAAATTGTTGCTCTGAAGAAAATAAGAATGGACAATGAGAGAGAAGGGTTTCCTATAACTGCTATACGTGAAATCAAAATTCTAAAGAAACTACACCATGAAAACGTAATCAAGTTGAAGGAAATCGTCACATCTCCAGGTCCTGAGAAAGATGATCAAGGGAGGCCAGATGGCAACAAATACAAAGGGGGCATATATATGGTTTTCGAATACATGGACCATGATTTAACAGGTCTTGCAGACCGGCCTGGCATGAGGTTTACTGTCCCCCAGATTAAGTGTTACATGAGGCAGCTTTTGACGGGACTTCACTATTGTCATGTCAATCAAGTTCTTCACCGTGATATCAAAGGTTCAAATCTTCTCATAGATAATGAAGGTAATCTGAAGCTGGCAGATTTTGGATTGGCTCGGTCATTTTCAAATGAGCACAATGCAAACCTTACAAATCGAGTCATCACATTATGGTACAGACCCCCTGAGTTACTATTGGGGACAACAAGGTATGGGCCAGCTGTGGATATGTGGTCTGTTGGGTGCATTTTTGCTGAGCTTCTTCACGGGAAGCCCATCTTTCCTGGAAAAGACGAGCCAGAGCAATTAAATAAGATTTTTGAGCTGTGTGGAGCACCGGATGAGGCGAACTGGCCTGGAGTTACTAAAACTCCTTGGTACAATCAGTTTAAGCCAACAAGACCGATGAAAAGGCGTCTGAGGGAAGTTTTCAGACATTTTGATCGCCATGCATTGGAGTTGTTGGAGAAGATGCTCACACTTGATCCAGCTCAGAGAATTCCTGCCAAGGACGCACTTGATGCCGAGTACTTCTGGGCTGATCCATTACCATGTGATCCCAAGAGTTTACCCAAGTACGAGTCATCACATGAGTTTCAGACCAAGAAAAAGCGTCAGCAGCAGCGGCTGAATGAAGAAAATGCCAAACGTGTTAAAATGCAGCATCCACAGCAGCATACCCGTCTTCCGCCGATTCAGCAGGGTGGACAACATGCCCAAATGCGGCAAGGTCCTTCCCACCCTGTTCATGGTTCTCAACCAGCAGTTGCTGCCGGACCTAGCCATCATTATGGGAAGCCTCGAGGGCCCTCTGGTGGGCCAGGAAGATACCCTCCTGGTGGGAACCCTAGTGGGGGATACAATCATCCAAATCGTGGAGGTCAAGGAGGGGGTGCCGGTTATGGCAGTGGACCATATCCTCCTCAAGCGCGAGGAGCACCTTATGGATCTAGTGGTATGCCTGCTGGACCTGGCGGCGGCGGTCCTCGTGGTGGAGGTGGAGGTGGCAGTGGCTATGGAGTTGGCGCTCCAAATTATCCTCAAGGTGGTCCTCCATATGGTGGATCGACTGGTGGTCGAGGGTCAAACATGATGGGTGGGAATCGCAATCAACAGTATGGTTGGCAGCAGTAA 1572 0.4866 MTMAAPGHLNVTESPSRGSRSVDCFHKLEQIGEGTYGQVYMAREIETGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDDQGRPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNEHNANLTNRVITLWYRPPELLLGTTRYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEANWPGVTKTPWYNQFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPAQRIPAKDALDAEYFWADPLPCDPKSLPKYESSHEFQTKKKRQQQRLNEENAKRVKMQHPQQHTRLPPIQQGGQHAQMRQGPSHPVHGSQPAVAAGPSHHYGKPRGPSGGPGRYPPGGNPSGGYNHPNRGGQGGGAGYGSGPYPPQARGAPYGSSGMPAGPGGGGPRGGGGGGSGYGVGAPNYPQGGPPYGGSTGGRGSNMMGGNRNQQYGWQQ* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1389 523 MobiDBLite consensus disorder prediction 339 366 - -
Tpr6g1389 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Tpr6g1389 523 SUPERFAMILY Protein kinase-like (PK-like) 20 331 IPR011009 -
Tpr6g1389 523 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Tpr6g1389 523 MobiDBLite consensus disorder prediction 339 417 - -
Tpr6g1389 523 Gene3D Phosphorylase Kinase; domain 1 12 121 - -
Tpr6g1389 523 Coils Coil 342 362 - -
Tpr6g1389 523 Gene3D Transferase(Phosphotransferase) domain 1 122 364 - -
Tpr6g1389 523 SMART serkin_6 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g1389 523 CDD STKc_CDK9_like 25 324 - -
Tpr6g1389 523 MobiDBLite consensus disorder prediction 448 523 - -
Tpr6g1389 523 MobiDBLite consensus disorder prediction 507 523 - -
Tpr6g1389 523 Pfam Protein kinase domain 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g1389 523 MobiDBLite consensus disorder prediction 372 387 - -
Tpr6g1389 523 PANTHER CELL DIVISION PROTEIN KINASE 5 453 - -
Tpr6g1389 523 PANTHER CYCLIN-DEPENDENT KINASE C-2 5 453 - -
Tpr6g1389 523 ProSiteProfiles Protein kinase domain profile. 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1389 Tpr-Chr6 14935186 14940480 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1389 1 523 Core Cell Cycle Gene Families AT5G10270 76.749 0.0 772
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Tpr6g1389 Pkinase 4.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1389 K08819 - gmx:100793565 855.514