Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1379 ATGTCTTACCAAGTCCGCGAAAATCTCTTCATCAGCAACATCAACCACGCCGCAGAAATTCTTCAAAACGGCACCGTTCCACCACACAACATCACTCACATCCTCTCCGTTCTCAGTTCCGCTTCCATTTCCTTCTTCACCGAATGGCGTTCCACTCTCTCCATCTCCGTTAACCAGATCTCCCAACTTCATGTCTCCGACCTCCCTACCGCCGCCAAGTCCGCTCTCTCTCCGGACAAACTCATCTACTCGCTTGAATACGCCGGTAAAGACCTCAAACTCGTCAGAATGGCGGTTCCGTTGAAAGATACAGAGAGTGAGAATTTGTTGGATCATCTTGAAGTTTGTATCGATTTCATTGATCGGAGTAGAAAGGAAGGTTCTGTTTTGGTTCACTGTTTTGCTGGTGTTTCTAGAAGTGCATCGGTTATTACGGCTTATTTGATGAAAAGTGAAAATCTGTCACTAGAAGATGCCCTTGAATCATTAAGGCAGAGCTGTGAATTTGTTTGCCCCAATGATGGTTTTCTAGAACAGTTGAAAATGTTTGAGGAGATGGGTTTCAAGGTTGATCATTCTAGTCCTGTGTATAAGCGCTTTCGCCTGAAAACACTAGGCGAGAATCATCACTCAGGGTTGAGGATAGACAGTTCTAAACTTGGTGAAGATCCTGGCATGCCTAGTGAAACTTCTTCAGAGGTGGAAGGAGCTACTAAAGTAGAAAATAATCGTAGCCCTACCTATCGCTGTAAGAAGTGCCGTCGGATTGTTGCATTGCAAGAGCATGTCATAGATCATATTCCTGGTGAGGGTGAGACATCCTTTGGTTGGCACAAGTGGAGAAGCGGCAATCCTTTTAACAAGTCAAATGAATCTGAGTGTTCTTCCATATTTATTGAGCCTCTACGATGGATGAAAGATGTTGAGGAAGGCGCATTGGAGGGAAAGCTGTCCTGTGCTCATTGTGATGCCCGTTTGGGATACTTCAATTGGGCAGGCATACAATGCAGCTGTGGAAGCTGGATAACCCCAGCTTTTCAACTCCACAAAAGTCGGGTAGATATAAGTCCTGTGTAA 1077 0.4513 MSYQVRENLFISNINHAAEILQNGTVPPHNITHILSVLSSASISFFTEWRSTLSISVNQISQLHVSDLPTAAKSALSPDKLIYSLEYAGKDLKLVRMAVPLKDTESENLLDHLEVCIDFIDRSRKEGSVLVHCFAGVSRSASVITAYLMKSENLSLEDALESLRQSCEFVCPNDGFLEQLKMFEEMGFKVDHSSPVYKRFRLKTLGENHHSGLRIDSSKLGEDPGMPSETSSEVEGATKVENNRSPTYRCKKCRRIVALQEHVIDHIPGEGETSFGWHKWRSGNPFNKSNESECSSIFIEPLRWMKDVEEGALEGKLSCAHCDARLGYFNWAGIQCSCGSWITPAFQLHKSRVDISPV* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1379 358 MobiDBLite consensus disorder prediction 213 239 - -
Tpr6g1379 358 ProSitePatterns Tyrosine specific protein phosphatases active site. 131 141 IPR016130 GO:0016311|GO:0016791
Tpr6g1379 358 Pfam Dual specificity phosphatase, catalytic domain 92 185 IPR000340 GO:0008138|GO:0016311
Tpr6g1379 358 PIRSF DUSP12 82 358 IPR016278 GO:0006470|GO:0008138
Tpr6g1379 358 PIRSF DUSP12 2 70 IPR016278 GO:0006470|GO:0008138
Tpr6g1379 358 CDD DSP_DUSP12 4 191 - -
Tpr6g1379 358 SMART dsp_5 1 186 IPR020422 GO:0006470|GO:0008138
Tpr6g1379 358 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER 1 354 - -
Tpr6g1379 358 Gene3D Protein tyrosine phosphatase superfamily 3 207 IPR029021 -
Tpr6g1379 358 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 107 165 IPR000387 GO:0016311|GO:0016791
Tpr6g1379 358 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 189 IPR020422 GO:0006470|GO:0008138
Tpr6g1379 358 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 4 189 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1379 Tpr-Chr6 14809608 14815196 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1379 94 185 Protein tyrosine phosphatase (PTP) family AT3G06110 36.559 2.85e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1379 K14819 - gmx:100804683 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1379 6 14809608 14815196 Tpr6g1379 6 14809608 14815196 ECH